Analysis of interatomic Contacts of Structural Units in PDB entry:
6WK2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WK2 entry

There are 4 chains in PDB entry 6WK2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
Y	THR 66	LYS 84
A	VAL 19	TYR 501
C	THR 66	LYS 84
D	VAL 19	TYR 501

There are 52 helices in PDB entry 6WK2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	37	Right-handed alpha
Helix 2	AA2	A	41	43	Right-handed 310
Helix 3	AA3	A	44	62	Right-handed alpha
Helix 4	AA4	A	73	76	Right-handed 310
Helix 5	AA5	A	77	88	Right-handed alpha
Helix 6	AA6	A	125	127	Right-handed 310
Helix 7	AA7	A	130	135	Right-handed alpha
Helix 8	AA8	A	138	145	Right-handed alpha
Helix 9	AA9	A	145	151	Right-handed alpha
Helix 10	AB1	A	151	165	Right-handed alpha
Helix 11	AB2	A	171	176	Right-handed alpha
Helix 12	AB3	A	184	188	Right-handed 310
Helix 13	AB4	A	189	195	Right-handed alpha
Helix 14	AB5	A	200	226	Right-handed alpha
Helix 15	AB6	A	227	230	Right-handed 310
Helix 16	AB7	A	232	236	Right-handed 310
Helix 17	AB8	A	239	254	Right-handed alpha
Helix 18	AB9	A	272	276	Right-handed 310
Helix 19	AC1	A	316	325	Right-handed alpha
Helix 20	AC2	A	348	360	Right-handed alpha
Helix 21	AC3	A	377	388	Right-handed alpha
Helix 22	AC4	A	390	399	Right-handed alpha
Helix 23	AC5	A	402	409	Right-handed alpha
Helix 24	AC6	A	418	438	Right-handed alpha
Helix 25	AC7	A	443	454	Right-handed alpha
Helix 26	AC8	A	457	494	Right-handed alpha
Helix 27	AC9	D	20	37	Right-handed alpha
Helix 28	AD1	D	41	43	Right-handed 310
Helix 29	AD2	D	44	62	Right-handed alpha
Helix 30	AD3	D	73	76	Right-handed 310
Helix 31	AD4	D	77	88	Right-handed alpha
Helix 32	AD5	D	125	127	Right-handed 310
Helix 33	AD6	D	130	135	Right-handed alpha
Helix 34	AD7	D	138	145	Right-handed alpha
Helix 35	AD8	D	145	151	Right-handed alpha
Helix 36	AD9	D	151	165	Right-handed alpha
Helix 37	AE1	D	171	176	Right-handed alpha
Helix 38	AE2	D	184	188	Right-handed 310
Helix 39	AE3	D	189	195	Right-handed alpha
Helix 40	AE4	D	201	226	Right-handed alpha
Helix 41	AE5	D	227	230	Right-handed 310
Helix 42	AE6	D	232	236	Right-handed 310
Helix 43	AE7	D	239	254	Right-handed alpha
Helix 44	AE8	D	272	276	Right-handed 310
Helix 45	AE9	D	316	325	Right-handed alpha
Helix 46	AF1	D	348	359	Right-handed alpha
Helix 47	AF2	D	377	388	Right-handed alpha
Helix 48	AF3	D	390	399	Right-handed alpha
Helix 49	AF4	D	402	409	Right-handed alpha
Helix 50	AF5	D	418	438	Right-handed alpha
Helix 51	AF6	D	443	454	Right-handed alpha
Helix 52	AF7	D	457	494	Right-handed alpha

There are 8 sheets in PDB entry 6WK2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	100	first strand
Strand 2	A	104	109	anti-parallel
Strand 3	A	307	310	anti-parallel
Strand 4	A	277	278	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	123	first strand
Strand 2	A	293	297	anti-parallel
Strand 3	A	285	288	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	265	269	anti-parallel
Strand 3	A	255	258	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	341	first strand
Strand 2	A	364	370	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	100	first strand
Strand 2	D	104	109	anti-parallel
Strand 3	D	307	310	anti-parallel
Strand 4	D	277	278	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	123	first strand
Strand 2	D	293	297	anti-parallel
Strand 3	D	285	288	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	129	first strand
Strand 2	D	265	269	anti-parallel
Strand 3	D	255	258	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	335	341	first strand
Strand 2	D	364	370	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WK2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WK2