Analysis of interatomic Contacts of Structural Units in PDB entry:
6WKR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WKR entry

There are 5 chains in PDB entry 6WKR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
T	MET 1	CYS 76
A	ALA 81	ARG 682
L	TYR 80	ARG 441
N	LYS 4	ASN 410
C	LYS 17	LYS 307

There are 89 helices in PDB entry 6WKR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	T	22	35	Right-handed alpha
Helix 2	AA2	T	37	39	Right-handed 310
Helix 3	AA3	T	55	60	Right-handed alpha
Helix 4	AA4	A	83	107	Right-handed alpha
Helix 5	AA5	A	111	115	Right-handed 310
Helix 6	AA6	A	134	147	Right-handed alpha
Helix 7	AA7	A	238	243	Right-handed 310
Helix 8	AA8	A	459	470	Right-handed alpha
Helix 9	AA9	A	504	508	Right-handed 310
Helix 10	AB1	A	539	543	Right-handed 310
Helix 11	AB2	A	589	602	Right-handed alpha
Helix 12	AB3	A	607	625	Right-handed alpha
Helix 13	AB4	A	628	630	Right-handed 310
Helix 14	AB5	A	631	651	Right-handed alpha
Helix 15	AB6	A	652	666	Right-handed alpha
Helix 16	AB7	A	670	682	Right-handed alpha
Helix 17	AB8	L	267	278	Right-handed alpha
Helix 18	AB9	N	5	28	Right-handed alpha
Helix 19	AC1	N	153	157	Right-handed 310
Helix 20	AC2	N	355	362	Right-handed alpha
Helix 21	AC3	C	18	61	Right-handed alpha
Helix 22	AC4	C	138	143	Right-handed alpha
Helix 23	AC5	C	143	153	Right-handed alpha
Helix 24	AC6	C	168	178	Right-handed alpha
Helix 25	AC7	C	221	231	Right-handed alpha
Helix 26	AC8	C	236	250	Right-handed alpha
Helix 27	AC9	C	273	284	Right-handed alpha
Helix 28	AD1	C	328	338	Right-handed alpha
Helix 29	AD2	C	433	448	Right-handed alpha
Helix 30	AD3	C	450	458	Right-handed alpha
Helix 31	AD4	C	462	473	Right-handed alpha
Helix 32	AD5	C	474	477	Right-handed 310
Helix 33	AD6	C	491	496	Right-handed alpha
Helix 34	AD7	C	496	511	Right-handed alpha
Helix 35	AD8	C	512	514	Right-handed 310
Helix 36	AD9	C	534	539	Right-handed alpha
Helix 37	AE1	C	571	576	Right-handed alpha
Helix 38	AE2	C	604	609	Right-handed alpha
Helix 39	AE3	C	648	662	Right-handed alpha
Helix 40	AE4	C	682	687	Right-handed 310
Helix 41	AE5	C	729	737	Right-handed alpha
Helix 42	AE6	B	108	112	Right-handed 310
Helix 43	AE7	B	145	151	Right-handed alpha
Helix 44	AE8	B	161	166	Right-handed 310
Helix 45	AE9	P	66	78	Right-handed alpha
Helix 46	AF1	P	79	83	Right-handed 310
Helix 47	AF2	P	103	116	Right-handed alpha
Helix 48	AF3	P	191	210	Right-handed alpha
Helix 49	AF4	P	257	259	Right-handed 310
Helix 50	AF5	P	270	272	Right-handed 310
Helix 51	AF6	P	274	285	Right-handed 310
Helix 52	AF7	I	44	55	Right-handed alpha
Helix 53	AF8	I	63	75	Right-handed alpha
Helix 54	AF9	I	85	114	Right-handed alpha
Helix 55	AG1	I	120	132	Right-handed alpha
Helix 56	AG2	J	24	29	Right-handed 310
Helix 57	AG3	J	30	42	Right-handed alpha
Helix 58	AG4	J	49	76	Right-handed alpha
Helix 59	AG5	J	82	94	Right-handed alpha
Helix 60	AG6	K	16	22	Right-handed alpha
Helix 61	AG7	K	26	37	Right-handed alpha
Helix 62	AG8	K	45	73	Right-handed alpha
Helix 63	AG9	K	79	88	Right-handed alpha
Helix 64	AH1	K	90	97	Right-handed alpha
Helix 65	AH2	M	34	44	Right-handed alpha
Helix 66	AH3	M	53	81	Right-handed alpha
Helix 67	AH4	M	87	99	Right-handed alpha
Helix 68	AH5	M	101	121	Right-handed alpha
Helix 69	AH6	O	44	55	Right-handed alpha
Helix 70	AH7	O	63	76	Right-handed alpha
Helix 71	AH8	O	85	114	Right-handed alpha
Helix 72	AH9	O	120	131	Right-handed alpha
Helix 73	AI1	Q	25	29	Right-handed 310
Helix 74	AI2	Q	30	42	Right-handed alpha
Helix 75	AI3	Q	49	77	Right-handed alpha
Helix 76	AI4	Q	82	93	Right-handed alpha
Helix 77	AI5	R	16	22	Right-handed alpha
Helix 78	AI6	R	26	36	Right-handed alpha
Helix 79	AI7	R	45	73	Right-handed alpha
Helix 80	AI8	R	79	88	Right-handed alpha
Helix 81	AI9	R	90	97	Right-handed alpha
Helix 82	AJ1	S	34	44	Right-handed alpha
Helix 83	AJ2	S	52	82	Right-handed alpha
Helix 84	AJ3	S	87	97	Right-handed alpha
Helix 85	AJ4	S	101	121	Right-handed alpha
Helix 86	AJ5	F	22	35	Right-handed alpha
Helix 87	AJ6	E	24	36	Right-handed alpha
Helix 88	AJ7	E	46	51	Right-handed alpha
Helix 89	AJ8	E	51	56	Right-handed alpha

There are 35 sheets in PDB entry 6WKR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	12	16	first strand
Strand 2	T	2	7	anti-parallel
Strand 3	T	66	71	parallel
Strand 4	T	41	45	anti-parallel
Strand 5	T	48	49	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	160	first strand
Strand 2	A	230	233	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	165	first strand
Strand 2	A	354	357	anti-parallel
Strand 3	A	315	318	anti-parallel
Strand 4	P	219	230	anti-parallel
Strand 5	P	238	243	anti-parallel
Strand 6	P	252	255	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	165	first strand
Strand 2	A	354	357	anti-parallel
Strand 3	A	315	318	anti-parallel
Strand 4	P	219	230	anti-parallel
Strand 5	P	264	268	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	211	first strand
Strand 2	A	184	192	anti-parallel
Strand 3	A	245	253	anti-parallel
Strand 4	A	297	300	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	444	first strand
Strand 2	A	427	433	anti-parallel
Strand 3	A	484	491	parallel
Strand 4	A	474	475	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	528	first strand
Strand 2	N	32	39	anti-parallel
Strand 3	N	398	404	anti-parallel
Strand 4	N	390	394	anti-parallel
Strand 5	N	377	381	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	413	418	first strand
Strand 2	L	424	429	anti-parallel
Strand 3	L	433	439	anti-parallel
Strand 4	L	82	89	anti-parallel
Strand 5	C	86	87	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	100	101	first strand
Strand 2	L	111	116	anti-parallel
Strand 3	L	121	127	anti-parallel
Strand 4	L	131	136	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	138	139	first strand
Strand 2	C	99	100	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	149	154	first strand
Strand 2	L	161	166	anti-parallel
Strand 3	L	172	176	anti-parallel
Strand 4	L	181	186	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	193	198	first strand
Strand 2	L	205	210	anti-parallel
Strand 3	L	215	219	anti-parallel
Strand 4	L	224	229	anti-parallel
Strand 5	L	292	294	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	239	244	first strand
Strand 2	L	250	255	anti-parallel
Strand 3	L	260	264	anti-parallel
Strand 4	L	299	301	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	309	315	first strand
Strand 2	L	318	323	anti-parallel
Strand 3	L	327	333	anti-parallel
Strand 4	L	350	357	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	368	370	first strand
Strand 2	L	376	379	anti-parallel
Strand 3	L	389	390	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	48	54	first strand
Strand 2	N	63	68	anti-parallel
Strand 3	N	77	84	anti-parallel
Strand 4	N	115	123	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	140	143	first strand
Strand 2	N	149	152	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	180	185	first strand
Strand 2	N	192	197	anti-parallel
Strand 3	N	202	206	anti-parallel
Strand 4	N	221	223	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	230	232	first strand
Strand 2	N	242	247	anti-parallel
Strand 3	N	251	256	anti-parallel
Strand 4	N	267	270	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	276	281	first strand
Strand 2	N	289	293	anti-parallel
Strand 3	N	300	301	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	320	323	first strand
Strand 2	N	334	337	anti-parallel
Strand 3	N	342	344	anti-parallel
Strand 4	N	368	370	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	84	first strand
Strand 2	C	95	97	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	115	first strand
Strand 2	C	680	681	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	121	first strand
Strand 2	C	644	647	parallel
Strand 3	C	673	676	anti-parallel
Strand 4	C	667	668	anti-parallel
Strand 5	I	27	28	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	286	first strand
Strand 2	C	291	292	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	614	618	first strand
Strand 2	C	624	628	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	637	640	first strand
Strand 2	C	705	712	anti-parallel
Strand 3	C	695	702	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	53	54	first strand
Strand 2	P	63	64	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	83	84	first strand
Strand 2	J	80	81	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	118	119	first strand
Strand 2	J	45	46	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	42	43	first strand
Strand 2	M	85	86	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	101	102	first strand
Strand 2	Q	97	98	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	42	43	first strand
Strand 2	S	85	86	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	77	78	first strand
Strand 2	S	50	51	parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	16	first strand
Strand 2	F	2	6	anti-parallel
Strand 3	F	65	71	parallel
Strand 4	F	41	45	anti-parallel
Strand 5	F	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WKR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WKR