Analysis of interatomic Contacts of Structural Units in PDB entry:
6WKU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WKU entry

There is 1 chain in PDB entry 6WKU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	THR 678

There are 18 helices in PDB entry 6WKU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	51	Right-handed 310
Helix 2	AA2	A	97	105	Right-handed 310
Helix 3	AA3	A	149	151	Right-handed 310
Helix 4	AA4	A	160	162	Right-handed 310
Helix 5	AA5	A	197	201	Right-handed 310
Helix 6	AA6	A	214	219	Right-handed 310
Helix 7	AA7	A	273	275	Right-handed 310
Helix 8	AA8	A	321	327	Right-handed 310
Helix 9	AA9	A	382	384	Right-handed 310
Helix 10	AB1	A	400	402	Right-handed 310
Helix 11	AB2	A	420	424	Right-handed 310
Helix 12	AB3	A	436	442	Right-handed alpha
Helix 13	AB4	A	498	500	Right-handed 310
Helix 14	AB5	A	548	554	Right-handed 310
Helix 15	AB6	A	598	600	Right-handed 310
Helix 16	AB7	A	609	611	Right-handed 310
Helix 17	AB8	A	646	650	Right-handed 310
Helix 18	AB9	A	660	668	Right-handed 310

There are 12 sheets in PDB entry 6WKU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	11	first strand
Strand 2	A	107	113	anti-parallel
Strand 3	A	25	38	anti-parallel
Strand 4	A	53	54	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	25	38	anti-parallel
Strand 3	A	79	83	anti-parallel
Strand 4	A	173	177	anti-parallel
Strand 5	A	182	183	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	570	first strand
Strand 2	A	670	676	anti-parallel
Strand 3	A	583	596	anti-parallel
Strand 4	A	613	614	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	604	first strand
Strand 2	A	583	596	anti-parallel
Strand 3	A	638	642	anti-parallel
Strand 4	A	62	65	anti-parallel
Strand 5	A	71	73	anti-parallel
Strand 6	A	657	659	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	121	first strand
Strand 2	A	221	226	anti-parallel
Strand 3	A	135	147	anti-parallel
Strand 4	A	164	165	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	155	first strand
Strand 2	A	135	147	anti-parallel
Strand 3	A	189	193	anti-parallel
Strand 4	A	286	290	anti-parallel
Strand 5	A	294	297	anti-parallel
Strand 6	A	208	211	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	235	first strand
Strand 2	A	329	335	anti-parallel
Strand 3	A	250	262	anti-parallel
Strand 4	A	277	278	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	268	first strand
Strand 2	A	250	262	anti-parallel
Strand 3	A	303	307	anti-parallel
Strand 4	A	395	398	anti-parallel
Strand 5	A	404	406	anti-parallel
Strand 6	A	318	319	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	343	first strand
Strand 2	A	446	452	anti-parallel
Strand 3	A	357	369	anti-parallel
Strand 4	A	386	387	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	377	first strand
Strand 2	A	357	369	anti-parallel
Strand 3	A	412	416	anti-parallel
Strand 4	A	511	514	anti-parallel
Strand 5	A	520	522	anti-parallel
Strand 6	A	432	434	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	460	first strand
Strand 2	A	556	562	anti-parallel
Strand 3	A	474	487	anti-parallel
Strand 4	A	502	503	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	493	first strand
Strand 2	A	474	487	anti-parallel
Strand 3	A	528	532	anti-parallel
Strand 4	A	622	626	anti-parallel
Strand 5	A	630	632	anti-parallel
Strand 6	A	545	546	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WKU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WKU