Analysis of interatomic Contacts of Structural Units in PDB entry:
6WL4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WL4 entry

There are 9 chains in PDB entry 6WL4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	THR 178
B	ARG 1	LEU 8
C	SER 2	ASP 238
D	GLY 1	ALA 177
E	ARG 1	LEU 8
F	SER 2	SER 239
G	GLY 1	ALA 177
H	ARG 1	LEU 8
I	ASP 1	PHE 202

There are 24 helices in PDB entry 6WL4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	86	Right-handed alpha
Helix 2	AA2	A	137	150	Right-handed alpha
Helix 3	AA3	A	151	162	Right-handed alpha
Helix 4	AA4	A	162	178	Right-handed alpha
Helix 5	AA5	C	82	85	Right-handed 310
Helix 6	AA6	C	114	118	Right-handed 310
Helix 7	AA7	C	129	136	Right-handed alpha
Helix 8	AA8	C	192	197	Right-handed alpha
Helix 9	AA9	D	57	86	Right-handed alpha
Helix 10	AB1	D	139	151	Right-handed alpha
Helix 11	AB2	D	151	161	Right-handed alpha
Helix 12	AB3	D	162	177	Right-handed alpha
Helix 13	AB4	F	82	86	Right-handed 310
Helix 14	AB5	F	114	118	Right-handed 310
Helix 15	AB6	F	129	135	Right-handed alpha
Helix 16	AB7	F	192	197	Right-handed alpha
Helix 17	AB8	G	49	55	Right-handed 310
Helix 18	AB9	G	56	85	Right-handed alpha
Helix 19	AC1	G	137	151	Right-handed alpha
Helix 20	AC2	G	151	162	Right-handed alpha
Helix 21	AC3	G	162	177	Right-handed alpha
Helix 22	AC4	I	82	86	Right-handed 310
Helix 23	AC5	I	129	137	Right-handed alpha
Helix 24	AC6	I	192	197	Right-handed alpha

There are 19 sheets in PDB entry 6WL4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	21	28	anti-parallel
Strand 4	A	3	13	anti-parallel
Strand 5	A	93	103	anti-parallel
Strand 6	A	109	118	anti-parallel
Strand 7	A	121	126	anti-parallel
Strand 8	A	133	135	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	7	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	74	79	anti-parallel
Strand 4	C	64	68	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	107	112	parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	31	38	anti-parallel
Strand 5	C	43	50	anti-parallel
Strand 6	C	54	57	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	126	first strand
Strand 2	C	138	146	anti-parallel
Strand 3	C	181	191	anti-parallel
Strand 4	C	168	170	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	126	first strand
Strand 2	C	138	146	anti-parallel
Strand 3	C	181	191	anti-parallel
Strand 4	C	175	178	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	164	first strand
Strand 2	C	153	159	anti-parallel
Strand 3	C	201	208	anti-parallel
Strand 4	C	227	234	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	37	first strand
Strand 2	D	21	28	anti-parallel
Strand 3	D	3	12	anti-parallel
Strand 4	D	94	103	anti-parallel
Strand 5	D	109	118	anti-parallel
Strand 6	D	121	126	anti-parallel
Strand 7	D	133	135	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	7	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	74	79	anti-parallel
Strand 4	F	64	67	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	107	111	parallel
Strand 3	F	87	94	anti-parallel
Strand 4	F	31	37	anti-parallel
Strand 5	F	43	50	anti-parallel
Strand 6	F	54	57	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	107	111	parallel
Strand 3	F	87	94	anti-parallel
Strand 4	F	102	103	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	122	126	first strand
Strand 2	F	138	146	anti-parallel
Strand 3	F	181	191	anti-parallel
Strand 4	F	168	170	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	122	126	first strand
Strand 2	F	138	146	anti-parallel
Strand 3	F	181	191	anti-parallel
Strand 4	F	175	178	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	163	first strand
Strand 2	F	153	159	anti-parallel
Strand 3	F	201	208	anti-parallel
Strand 4	F	227	234	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	37	first strand
Strand 2	G	21	28	anti-parallel
Strand 3	G	3	13	anti-parallel
Strand 4	G	93	103	anti-parallel
Strand 5	G	109	118	anti-parallel
Strand 6	G	121	126	anti-parallel
Strand 7	G	133	135	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	7	first strand
Strand 2	I	18	24	anti-parallel
Strand 3	I	74	79	anti-parallel
Strand 4	I	65	66	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	14	first strand
Strand 2	I	107	112	parallel
Strand 3	I	87	94	anti-parallel
Strand 4	I	31	37	anti-parallel
Strand 5	I	44	50	anti-parallel
Strand 6	I	53	57	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	14	first strand
Strand 2	I	107	112	parallel
Strand 3	I	87	94	anti-parallel
Strand 4	I	102	103	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	122	123	first strand
Strand 2	I	138	148	anti-parallel
Strand 3	I	181	191	anti-parallel
Strand 4	I	175	178	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	162	163	first strand
Strand 2	I	153	159	anti-parallel
Strand 3	I	201	208	anti-parallel
Strand 4	I	227	234	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WL4

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WL4