Analysis of interatomic Contacts of Structural Units in PDB entry:
6WM8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WM8 entry

There are 3 chains in PDB entry 6WM8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 7	SER 360
B	GLN 8	SER 360
C	GLN 8	SER 360

There are 30 helices in PDB entry 6WM8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	38	Right-handed alpha
Helix 2	AA2	A	44	63	Right-handed alpha
Helix 3	AA3	A	136	157	Right-handed alpha
Helix 4	AA4	A	162	177	Right-handed alpha
Helix 5	AA5	A	206	213	Right-handed alpha
Helix 6	AA6	A	260	274	Right-handed alpha
Helix 7	AA7	A	281	283	Right-handed 310
Helix 8	AA8	A	285	299	Right-handed alpha
Helix 9	AA9	A	339	343	Right-handed 310
Helix 10	AB1	A	351	360	Right-handed alpha
Helix 11	AB2	B	14	38	Right-handed alpha
Helix 12	AB3	B	44	62	Right-handed alpha
Helix 13	AB4	B	137	157	Right-handed alpha
Helix 14	AB5	B	162	176	Right-handed alpha
Helix 15	AB6	B	206	213	Right-handed alpha
Helix 16	AB7	B	259	274	Right-handed alpha
Helix 17	AB8	B	281	283	Right-handed 310
Helix 18	AB9	B	285	299	Right-handed alpha
Helix 19	AC1	B	339	343	Right-handed 310
Helix 20	AC2	B	351	360	Right-handed alpha
Helix 21	AC3	C	14	38	Right-handed alpha
Helix 22	AC4	C	44	62	Right-handed alpha
Helix 23	AC5	C	137	157	Right-handed alpha
Helix 24	AC6	C	162	176	Right-handed alpha
Helix 25	AC7	C	206	212	Right-handed alpha
Helix 26	AC8	C	259	273	Right-handed alpha
Helix 27	AC9	C	281	283	Right-handed 310
Helix 28	AD1	C	285	299	Right-handed alpha
Helix 29	AD2	C	339	343	Right-handed 310
Helix 30	AD3	C	351	360	Right-handed alpha

There are 15 sheets in PDB entry 6WM8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	82	first strand
Strand 2	A	105	114	anti-parallel
Strand 3	A	117	126	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	308	309	anti-parallel
Strand 3	A	238	239	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	181	first strand
Strand 2	A	223	231	anti-parallel
Strand 3	A	186	190	anti-parallel
Strand 4	A	200	202	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	181	first strand
Strand 2	A	223	231	anti-parallel
Strand 3	A	316	326	anti-parallel
Strand 4	A	329	332	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	279	first strand
Strand 2	A	246	249	anti-parallel
Strand 3	A	302	305	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	82	first strand
Strand 2	B	105	114	anti-parallel
Strand 3	B	117	126	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	308	309	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	181	first strand
Strand 2	B	223	231	anti-parallel
Strand 3	B	186	190	anti-parallel
Strand 4	B	200	202	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	181	first strand
Strand 2	B	223	231	anti-parallel
Strand 3	B	316	326	anti-parallel
Strand 4	B	329	332	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	279	first strand
Strand 2	B	246	249	anti-parallel
Strand 3	B	302	305	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	82	first strand
Strand 2	C	105	114	anti-parallel
Strand 3	C	117	126	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	181	first strand
Strand 2	C	223	231	anti-parallel
Strand 3	C	186	190	anti-parallel
Strand 4	C	200	202	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	181	first strand
Strand 2	C	223	231	anti-parallel
Strand 3	C	316	326	anti-parallel
Strand 4	C	329	332	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	239	first strand
Strand 2	C	308	309	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	279	first strand
Strand 2	C	246	249	anti-parallel
Strand 3	C	302	305	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WM8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WM8