Analysis of interatomic Contacts of Structural Units in PDB entry:
6WM9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WM9 entry

There are 6 chains in PDB entry 6WM9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 168	GLY 463
B	GLN 6	LYS 230
E	GLN 6	SER 227
C	SER 7	THR 218
F	SER 7	THR 218
D	THR 169	GLY 463

There are 36 helices in PDB entry 6WM9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	196	210	Right-handed alpha
Helix 2	AA2	A	217	240	Right-handed alpha
Helix 3	AA3	A	240	256	Right-handed alpha
Helix 4	AA4	A	256	261	Right-handed alpha
Helix 5	AA5	A	266	288	Right-handed alpha
Helix 6	AA6	A	289	308	Right-handed alpha
Helix 7	AA7	A	318	335	Right-handed alpha
Helix 8	AA8	A	336	362	Right-handed alpha
Helix 9	AA9	A	367	408	Right-handed alpha
Helix 10	AB1	A	415	463	Right-handed alpha
Helix 11	AB2	B	33	37	Right-handed 310
Helix 12	AB3	B	92	96	Right-handed 310
Helix 13	AB4	B	198	202	Right-handed 310
Helix 14	AB5	B	213	216	Right-handed 310
Helix 15	AB6	E	33	37	Right-handed 310
Helix 16	AB7	E	92	96	Right-handed 310
Helix 17	AB8	E	139	143	Right-handed 310
Helix 18	AB9	E	168	170	Right-handed 310
Helix 19	AC1	E	199	201	Right-handed 310
Helix 20	AC2	C	86	90	Right-handed 310
Helix 21	AC3	C	130	136	Right-handed alpha
Helix 22	AC4	C	190	196	Right-handed alpha
Helix 23	AC5	F	86	90	Right-handed 310
Helix 24	AC6	F	130	136	Right-handed alpha
Helix 25	AC7	F	190	197	Right-handed alpha
Helix 26	AC8	D	196	210	Right-handed alpha
Helix 27	AC9	D	217	240	Right-handed alpha
Helix 28	AD1	D	240	255	Right-handed alpha
Helix 29	AD2	D	256	262	Right-handed alpha
Helix 30	AD3	D	266	288	Right-handed alpha
Helix 31	AD4	D	289	294	Right-handed alpha
Helix 32	AD5	D	294	308	Right-handed alpha
Helix 33	AD6	D	318	335	Right-handed alpha
Helix 34	AD7	D	336	362	Right-handed alpha
Helix 35	AD8	D	367	408	Right-handed alpha
Helix 36	AD9	D	415	463	Right-handed alpha

There are 28 sheets in PDB entry 6WM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	181	first strand
Strand 2	A	188	189	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	317	first strand
Strand 2	A	413	414	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	12	first strand
Strand 2	B	23	30	anti-parallel
Strand 3	B	83	88	anti-parallel
Strand 4	B	73	78	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	119	123	parallel
Strand 3	B	97	104	anti-parallel
Strand 4	B	39	44	anti-parallel
Strand 5	B	50	56	anti-parallel
Strand 6	B	63	65	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	119	123	parallel
Strand 3	B	97	104	anti-parallel
Strand 4	B	112	115	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	136	first strand
Strand 2	B	147	157	anti-parallel
Strand 3	B	188	196	anti-parallel
Strand 4	B	175	177	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	144	first strand
Strand 2	B	147	157	anti-parallel
Strand 3	B	188	196	anti-parallel
Strand 4	B	181	182	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	166	first strand
Strand 2	B	206	212	anti-parallel
Strand 3	B	217	223	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	12	first strand
Strand 2	E	23	30	anti-parallel
Strand 3	E	83	88	anti-parallel
Strand 4	E	73	78	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	17	first strand
Strand 2	E	119	123	parallel
Strand 3	E	97	104	anti-parallel
Strand 4	E	39	44	anti-parallel
Strand 5	E	50	56	anti-parallel
Strand 6	E	63	65	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	17	first strand
Strand 2	E	119	123	parallel
Strand 3	E	97	104	anti-parallel
Strand 4	E	112	115	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	136	first strand
Strand 2	E	147	157	anti-parallel
Strand 3	E	188	197	anti-parallel
Strand 4	E	175	177	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	136	first strand
Strand 2	E	147	157	anti-parallel
Strand 3	E	188	197	anti-parallel
Strand 4	E	181	182	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	166	first strand
Strand 2	E	206	212	anti-parallel
Strand 3	E	217	223	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	110	114	parallel
Strand 3	C	91	100	anti-parallel
Strand 4	C	40	45	anti-parallel
Strand 5	C	52	55	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	110	114	parallel
Strand 3	C	91	100	anti-parallel
Strand 4	C	103	106	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	28	first strand
Strand 2	C	77	82	anti-parallel
Strand 3	C	69	74	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	127	first strand
Strand 2	C	139	148	anti-parallel
Strand 3	C	181	189	anti-parallel
Strand 4	C	168	170	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	127	first strand
Strand 2	C	139	148	anti-parallel
Strand 3	C	181	189	anti-parallel
Strand 4	C	174	175	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	163	first strand
Strand 2	C	154	159	anti-parallel
Strand 3	C	200	206	anti-parallel
Strand 4	C	209	215	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	17	first strand
Strand 2	F	110	114	parallel
Strand 3	F	92	98	anti-parallel
Strand 4	F	40	45	anti-parallel
Strand 5	F	52	55	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	17	first strand
Strand 2	F	110	114	parallel
Strand 3	F	92	98	anti-parallel
Strand 4	F	104	106	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	28	first strand
Strand 2	F	77	82	anti-parallel
Strand 3	F	69	74	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	123	127	first strand
Strand 2	F	139	148	anti-parallel
Strand 3	F	181	189	anti-parallel
Strand 4	F	168	170	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	123	127	first strand
Strand 2	F	139	148	anti-parallel
Strand 3	F	181	189	anti-parallel
Strand 4	F	174	175	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	154	159	first strand
Strand 2	F	200	206	anti-parallel
Strand 3	F	209	215	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	181	first strand
Strand 2	D	188	189	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	317	first strand
Strand 2	D	413	414	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WM9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WM9