Analysis of interatomic Contacts of Structural Units in PDB entry:
6WML

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WML entry

There are 4 chains in PDB entry 6WML (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 31	GLU 818
B	SER 31	GLU 818
C	SER 31	ILE 802
D	SER 33	VAL 815

There are 65 helices in PDB entry 6WML. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	162	167	Right-handed alpha
Helix 2	AA2	A	270	274	Right-handed 310
Helix 3	AA3	A	303	308	Right-handed 310
Helix 4	AA4	A	323	330	Right-handed alpha
Helix 5	AA5	A	331	336	Right-handed 310
Helix 6	AA6	A	360	366	Right-handed 310
Helix 7	AA7	A	384	391	Right-handed 310
Helix 8	AA8	A	411	417	Right-handed 310
Helix 9	AA9	A	476	481	Right-handed alpha
Helix 10	AB1	A	564	569	Right-handed alpha
Helix 11	AB2	A	577	583	Right-handed 310
Helix 12	AB3	A	619	624	Right-handed alpha
Helix 13	AB4	A	655	661	Right-handed alpha
Helix 14	AB5	A	680	687	Right-handed 310
Helix 15	AB6	A	752	757	Right-handed alpha
Helix 16	AB7	A	780	790	Right-handed alpha
Helix 17	AB8	B	162	167	Right-handed alpha
Helix 18	AB9	B	196	200	Right-handed 310
Helix 19	AC1	B	303	308	Right-handed 310
Helix 20	AC2	B	323	329	Right-handed alpha
Helix 21	AC3	B	331	335	Right-handed 310
Helix 22	AC4	B	360	366	Right-handed 310
Helix 23	AC5	B	383	391	Right-handed 310
Helix 24	AC6	B	411	417	Right-handed 310
Helix 25	AC7	B	476	481	Right-handed alpha
Helix 26	AC8	B	564	569	Right-handed alpha
Helix 27	AC9	B	577	583	Right-handed 310
Helix 28	AD1	B	619	624	Right-handed alpha
Helix 29	AD2	B	655	661	Right-handed alpha
Helix 30	AD3	B	680	687	Right-handed 310
Helix 31	AD4	B	752	757	Right-handed 310
Helix 32	AD5	B	780	789	Right-handed alpha
Helix 33	AD6	B	797	800	Right-handed 310
Helix 34	AD7	C	162	167	Right-handed alpha
Helix 35	AD8	C	238	243	Right-handed 310
Helix 36	AD9	C	270	274	Right-handed 310
Helix 37	AE1	C	303	308	Right-handed 310
Helix 38	AE2	C	323	330	Right-handed alpha
Helix 39	AE3	C	331	336	Right-handed 310
Helix 40	AE4	C	360	366	Right-handed 310
Helix 41	AE5	C	383	391	Right-handed 310
Helix 42	AE6	C	411	415	Right-handed 310
Helix 43	AE7	C	476	481	Right-handed alpha
Helix 44	AE8	C	564	569	Right-handed alpha
Helix 45	AE9	C	577	583	Right-handed 310
Helix 46	AF1	C	619	624	Right-handed alpha
Helix 47	AF2	C	655	661	Right-handed alpha
Helix 48	AF3	C	680	687	Right-handed 310
Helix 49	AF4	C	797	801	Right-handed 310
Helix 50	AF5	D	163	163	Right-handed 310
Helix 51	AF6	D	166	169	Right-handed 310
Helix 52	AF7	D	303	308	Right-handed 310
Helix 53	AF8	D	323	329	Right-handed alpha
Helix 54	AF9	D	330	336	Right-handed 310
Helix 55	AG1	D	360	366	Right-handed 310
Helix 56	AG2	D	383	391	Right-handed 310
Helix 57	AG3	D	411	415	Right-handed 310
Helix 58	AG4	D	476	481	Right-handed alpha
Helix 59	AG5	D	564	569	Right-handed alpha
Helix 60	AG6	D	577	583	Right-handed 310
Helix 61	AG7	D	619	624	Right-handed alpha
Helix 62	AG8	D	655	661	Right-handed alpha
Helix 63	AG9	D	680	687	Right-handed 310
Helix 64	AH1	D	706	710	Right-handed 310
Helix 65	AH2	D	779	785	Right-handed alpha

There are 25 sheets in PDB entry 6WML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 28 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	38	first strand
Strand 2	A	46	48	anti-parallel
Strand 3	A	67	69	parallel
Strand 4	A	91	93	parallel
Strand 5	A	129	131	parallel
Strand 6	A	150	152	parallel
Strand 7	A	174	176	parallel
Strand 8	A	205	207	parallel
Strand 9	A	226	228	parallel
Strand 10	A	250	252	parallel
Strand 11	A	291	293	parallel
Strand 12	A	315	317	parallel
Strand 13	A	341	343	parallel
Strand 14	A	371	373	parallel
Strand 15	A	398	400	parallel
Strand 16	A	422	424	parallel
Strand 17	A	485	487	parallel
Strand 18	A	509	511	parallel
Strand 19	A	534	536	parallel
Strand 20	A	558	560	parallel
Strand 21	A	588	590	parallel
Strand 22	A	612	614	parallel
Strand 23	A	643	645	parallel
Strand 24	A	668	670	parallel
Strand 25	A	692	694	parallel
Strand 26	A	716	718	parallel
Strand 27	A	740	742	parallel
Strand 28	A	766	768	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	A	115	116	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	161	first strand
Strand 2	A	191	192	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	277	278	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	382	first strand
Strand 2	A	408	409	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	607	first strand
Strand 2	A	637	638	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	774	775	first strand
Strand 2	A	803	805	parallel

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There are 28 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	45	48	anti-parallel
Strand 3	B	67	69	parallel
Strand 4	B	91	93	parallel
Strand 5	B	129	131	parallel
Strand 6	B	150	152	parallel
Strand 7	B	174	176	parallel
Strand 8	B	205	207	parallel
Strand 9	B	226	228	parallel
Strand 10	B	250	252	parallel
Strand 11	B	291	293	parallel
Strand 12	B	315	317	parallel
Strand 13	B	341	343	parallel
Strand 14	B	371	373	parallel
Strand 15	B	398	400	parallel
Strand 16	B	422	424	parallel
Strand 17	B	484	487	parallel
Strand 18	B	507	511	parallel
Strand 19	B	534	536	parallel
Strand 20	B	558	560	parallel
Strand 21	B	588	590	parallel
Strand 22	B	612	614	parallel
Strand 23	B	643	645	parallel
Strand 24	B	668	670	parallel
Strand 25	B	692	694	parallel
Strand 26	B	716	718	parallel
Strand 27	B	740	742	parallel
Strand 28	B	766	768	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	B	115	116	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	161	first strand
Strand 2	B	191	192	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	277	278	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	382	first strand
Strand 2	B	408	409	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	774	775	first strand
Strand 2	B	802	805	parallel
Strand 3	B	812	813	anti-parallel

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There are 28 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	46	48	anti-parallel
Strand 3	C	67	69	parallel
Strand 4	C	91	93	parallel
Strand 5	C	129	131	parallel
Strand 6	C	150	152	parallel
Strand 7	C	174	176	parallel
Strand 8	C	205	207	parallel
Strand 9	C	226	228	parallel
Strand 10	C	250	252	parallel
Strand 11	C	291	293	parallel
Strand 12	C	315	317	parallel
Strand 13	C	341	343	parallel
Strand 14	C	371	373	parallel
Strand 15	C	398	400	parallel
Strand 16	C	422	424	parallel
Strand 17	C	484	487	parallel
Strand 18	C	507	511	parallel
Strand 19	C	534	536	parallel
Strand 20	C	558	560	parallel
Strand 21	C	588	590	parallel
Strand 22	C	612	614	parallel
Strand 23	C	643	645	parallel
Strand 24	C	668	670	parallel
Strand 25	C	692	694	parallel
Strand 26	C	716	718	parallel
Strand 27	C	740	742	parallel
Strand 28	C	766	768	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	C	115	116	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	161	first strand
Strand 2	C	191	192	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	237	first strand
Strand 2	C	277	278	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	381	382	first strand
Strand 2	C	408	409	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	606	607	first strand
Strand 2	C	637	638	parallel

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There are 27 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	48	first strand
Strand 2	D	67	69	parallel
Strand 3	D	91	93	parallel
Strand 4	D	129	131	parallel
Strand 5	D	150	152	parallel
Strand 6	D	174	176	parallel
Strand 7	D	205	207	parallel
Strand 8	D	226	228	parallel
Strand 9	D	250	252	parallel
Strand 10	D	291	293	parallel
Strand 11	D	315	317	parallel
Strand 12	D	341	343	parallel
Strand 13	D	371	373	parallel
Strand 14	D	398	400	parallel
Strand 15	D	422	424	parallel
Strand 16	D	485	487	parallel
Strand 17	D	509	511	parallel
Strand 18	D	534	536	parallel
Strand 19	D	558	560	parallel
Strand 20	D	588	590	parallel
Strand 21	D	612	614	parallel
Strand 22	D	643	645	parallel
Strand 23	D	668	670	parallel
Strand 24	D	692	694	parallel
Strand 25	D	716	718	parallel
Strand 26	D	740	742	parallel
Strand 27	D	766	768	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	115	116	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	161	first strand
Strand 2	D	191	192	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	237	first strand
Strand 2	D	277	278	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	381	382	first strand
Strand 2	D	408	409	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	774	775	first strand
Strand 2	D	803	805	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WML

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WML