Analysis of interatomic Contacts of Structural Units in PDB entry:
6WMP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WMP entry

There are 8 chains in PDB entry 6WMP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 6	PRO 230
B	LEU 3	GLY 232
C	MET 1	GLU 1356
D	SER 12	GLU 1365
E	MET 1	GLU 69
F	A 17	C 29
G	G 1	T 24
R	A 11	A 20

There are 97 helices in PDB entry 6WMP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	52	Right-handed alpha
Helix 2	AA2	A	78	83	Right-handed alpha
Helix 3	AA3	A	115	117	Right-handed 310
Helix 4	AA4	A	205	222	Right-handed alpha
Helix 5	AA5	B	33	48	Right-handed alpha
Helix 6	AA6	B	76	86	Right-handed alpha
Helix 7	AA7	B	205	218	Right-handed alpha
Helix 8	AA8	B	225	230	Right-handed alpha
Helix 9	AA9	C	5	9	Right-handed 310
Helix 10	AB1	C	34	40	Right-handed alpha
Helix 11	AB2	C	52	58	Right-handed alpha
Helix 12	AB3	C	84	92	Right-handed alpha
Helix 13	AB4	C	206	210	Right-handed alpha
Helix 14	AB5	C	211	213	Right-handed 310
Helix 15	AB6	C	216	221	Right-handed alpha
Helix 16	AB7	C	349	354	Right-handed alpha
Helix 17	AB8	C	360	373	Right-handed alpha
Helix 18	AB9	C	382	389	Right-handed alpha
Helix 19	AC1	C	402	411	Right-handed alpha
Helix 20	AC2	C	425	440	Right-handed alpha
Helix 21	AC3	C	458	482	Right-handed alpha
Helix 22	AC4	C	498	512	Right-handed alpha
Helix 23	AC5	C	522	530	Right-handed alpha
Helix 24	AC6	C	554	558	Right-handed 310
Helix 25	AC7	C	613	617	Right-handed 310
Helix 26	AC8	C	651	653	Right-handed 310
Helix 27	AC9	C	678	689	Right-handed alpha
Helix 28	AD1	C	707	714	Right-handed alpha
Helix 29	AD2	C	822	827	Right-handed alpha
Helix 30	AD3	C	861	865	Right-handed 310
Helix 31	AD4	C	898	905	Right-handed alpha
Helix 32	AD5	C	946	978	Right-handed alpha
Helix 33	AD6	C	1031	1046	Right-handed alpha
Helix 34	AD7	C	1115	1120	Right-handed alpha
Helix 35	AD8	C	1123	1147	Right-handed alpha
Helix 36	AD9	C	1154	1164	Right-handed alpha
Helix 37	AE1	C	1172	1176	Right-handed 310
Helix 38	AE2	C	1177	1188	Right-handed alpha
Helix 39	AE3	C	1203	1215	Right-handed alpha
Helix 40	AE4	C	1250	1254	Right-handed 310
Helix 41	AE5	C	1284	1294	Right-handed alpha
Helix 42	AE6	C	1295	1302	Right-handed alpha
Helix 43	AE7	C	1309	1323	Right-handed alpha
Helix 44	AE8	C	1332	1343	Right-handed alpha
Helix 45	AE9	D	24	31	Right-handed alpha
Helix 46	AF1	D	92	98	Right-handed 310
Helix 47	AF2	D	112	115	Right-handed 310
Helix 48	AF3	D	129	138	Right-handed alpha
Helix 49	AF4	D	161	165	Right-handed 310
Helix 50	AF5	D	180	189	Right-handed alpha
Helix 51	AF6	D	191	204	Right-handed alpha
Helix 52	AF7	D	210	229	Right-handed alpha
Helix 53	AF8	D	231	234	Right-handed 310
Helix 54	AF9	D	244	248	Right-handed 310
Helix 55	AG1	D	264	283	Right-handed alpha
Helix 56	AG2	D	286	307	Right-handed alpha
Helix 57	AG3	D	324	328	Right-handed 310
Helix 58	AG4	D	335	340	Right-handed alpha
Helix 59	AG5	D	368	375	Right-handed alpha
Helix 60	AG6	D	375	386	Right-handed alpha
Helix 61	AG7	D	391	401	Right-handed alpha
Helix 62	AG8	D	405	414	Right-handed alpha
Helix 63	AG9	D	428	430	Right-handed 310
Helix 64	AH1	D	451	456	Right-handed alpha
Helix 65	AH2	D	471	481	Right-handed alpha
Helix 66	AH3	D	503	512	Right-handed alpha
Helix 67	AH4	D	527	536	Right-handed alpha
Helix 68	AH5	D	572	576	Right-handed alpha
Helix 69	AH6	D	595	611	Right-handed alpha
Helix 70	AH7	D	611	632	Right-handed alpha
Helix 71	AH8	D	647	668	Right-handed alpha
Helix 72	AH9	D	673	677	Right-handed 310
Helix 73	AI1	D	679	695	Right-handed alpha
Helix 74	AI2	D	695	700	Right-handed alpha
Helix 75	AI3	D	719	725	Right-handed alpha
Helix 76	AI4	D	730	739	Right-handed alpha
Helix 77	AI5	D	765	771	Right-handed alpha
Helix 78	AI6	D	772	785	Right-handed alpha
Helix 79	AI7	D	786	801	Right-handed alpha
Helix 80	AI8	D	865	871	Right-handed alpha
Helix 81	AI9	D	892	896	Right-handed alpha
Helix 82	AJ1	D	910	917	Right-handed alpha
Helix 83	AJ2	D	920	926	Right-handed 310
Helix 84	AJ3	D	1125	1133	Right-handed alpha
Helix 85	AJ4	D	1212	1230	Right-handed alpha
Helix 86	AJ5	D	1241	1246	Right-handed alpha
Helix 87	AJ6	D	1268	1275	Right-handed alpha
Helix 88	AJ7	D	1277	1282	Right-handed alpha
Helix 89	AJ8	D	1298	1303	Right-handed alpha
Helix 90	AJ9	D	1306	1312	Right-handed alpha
Helix 91	AK1	D	1315	1326	Right-handed alpha
Helix 92	AK2	D	1334	1341	Right-handed alpha
Helix 93	AK3	D	1348	1364	Right-handed alpha
Helix 94	AK4	E	5	10	Right-handed alpha
Helix 95	AK5	E	17	32	Right-handed alpha
Helix 96	AK6	E	40	44	Right-handed 310
Helix 97	AK7	E	46	57	Right-handed alpha

There are 31 sheets in PDB entry 6WMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	15	first strand
Strand 2	A	27	32	anti-parallel
Strand 3	A	192	200	anti-parallel
Strand 4	A	178	187	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	146	150	anti-parallel
Strand 3	A	54	61	anti-parallel
Strand 4	A	168	170	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	141	143	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	113	first strand
Strand 2	A	131	134	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	15	first strand
Strand 2	B	21	29	anti-parallel
Strand 3	B	190	198	anti-parallel
Strand 4	B	178	182	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	101	first strand
Strand 2	B	142	149	anti-parallel
Strand 3	B	50	58	anti-parallel
Strand 4	B	163	164	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	112	first strand
Strand 2	B	129	132	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1194	1195	parallel
Strand 3	C	703	704	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	78	first strand
Strand 2	C	96	104	anti-parallel
Strand 3	C	124	133	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	147	150	anti-parallel
Strand 3	C	515	517	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	454	457	first strand
Strand 2	C	152	156	anti-parallel
Strand 3	C	533	534	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	161	first strand
Strand 2	C	173	177	anti-parallel
Strand 3	C	184	187	anti-parallel
Strand 4	C	195	197	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	583	584	first strand
Strand 2	C	590	598	anti-parallel
Strand 3	C	601	610	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	636	640	first strand
Strand 2	C	645	649	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	719	720	first strand
Strand 2	C	784	787	anti-parallel
Strand 3	C	770	771	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	751	754	first strand
Strand 2	C	734	737	anti-parallel
Strand 3	C	725	730	anti-parallel
Strand 4	C	778	779	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	759	760	first strand
Strand 2	C	766	767	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	800	801	first strand
Strand 2	C	1243	1246	anti-parallel
Strand 3	C	1079	1082	anti-parallel
Strand 4	C	1087	1093	anti-parallel
Strand 5	C	818	820	parallel
Strand 6	C	1110	1111	anti-parallel
Strand 7	C	804	806	parallel
Strand 8	C	1237	1240	anti-parallel
Strand 9	C	1221	1222	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	832	843	first strand
Strand 2	C	1060	1072	anti-parallel
Strand 3	C	928	936	anti-parallel
Strand 4	C	878	879	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	889	891	first strand
Strand 2	C	915	917	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1257	1258	first strand
Strand 2	D	348	354	anti-parallel
Strand 3	D	463	467	anti-parallel
Strand 4	D	419	422	anti-parallel
Strand 5	D	432	440	anti-parallel
Strand 6	D	363	367	parallel
Strand 7	D	445	447	anti-parallel
Strand 8	D	348	354	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1280	1281	first strand
Strand 2	D	344	345	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1347	1352	first strand
Strand 2	D	17	22	anti-parallel
Strand 3	D	1329	1331	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	35	first strand
Strand 2	D	100	103	parallel
Strand 3	D	240	242	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	110	first strand
Strand 2	D	236	237	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	142	146	anti-parallel
Strand 3	D	175	177	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	524	525	first strand
Strand 2	D	545	555	parallel
Strand 3	D	561	571	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	806	808	first strand
Strand 2	D	890	891	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	817	819	first strand
Strand 2	D	876	878	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1152	1153	first strand
Strand 2	D	1161	1162	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1265	1267	first strand
Strand 2	D	1251	1254	anti-parallel
Strand 3	D	1290	1292	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WMP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WMP