Analysis of interatomic Contacts of Structural Units in PDB entry:
6WMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WMS entry

There are 4 chains in PDB entry 6WMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 381LYS 576
B
 HIS 381LYS 576
E
 GLY 2261MET 2271
F
 GLY 2261GLY 2272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6WMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
397 422Right-handed alpha
Helix 2
AA2
A
425 429Right-handed 310
Helix 3
AA3
A
430 450Right-handed alpha
Helix 4
AA4
A
471 477Right-handed alpha
Helix 5
AA5
A
480 496Right-handed alpha
Helix 6
AA6
A
499 513Right-handed alpha
Helix 7
AA7
A
521 544Right-handed alpha
Helix 8
AA8
A
546 576Right-handed alpha
Helix 9
AA9
B
397 422Right-handed alpha
Helix 10
AB1
B
425 429Right-handed 310
Helix 11
AB2
B
430 450Right-handed alpha
Helix 12
AB3
B
471 477Right-handed alpha
Helix 13
AB4
B
480 496Right-handed alpha
Helix 14
AB5
B
499 513Right-handed alpha
Helix 15
AB6
B
521 544Right-handed alpha
Helix 16
AB7
B
548 576Right-handed alpha
Helix 17
AB8
E
2262 2271Right-handed alpha
Helix 18
AB9
F
2262 2271Right-handed alpha
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There are 2 sheets in PDB entry 6WMS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 455first strand
Strand 2
A
460 462anti-parallel
Strand 3
A
468 470anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
454 455first strand
Strand 2
B
460 462anti-parallel
Strand 3
B
468 470anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il