Analysis of interatomic Contacts of Structural Units in PDB entry:
6WMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WMV entry

There are 2 chains in PDB entry 6WMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET -139ILE 209
C
 MET -139PRO 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6WMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-131 -127Right-handed 310
Helix 2
AA2
A
-119 -108Right-handed alpha
Helix 3
AA3
A
-54 -50Right-handed 310
Helix 4
AA4
A
-46 -34Right-handed alpha
Helix 5
AA5
A
-18 -5Right-handed alpha
Helix 6
AA6
A
10 26Right-handed alpha
Helix 7
AA7
A
29 49Right-handed alpha
Helix 8
AA8
A
53 70Right-handed alpha
Helix 9
AA9
A
70 78Right-handed alpha
Helix 10
AB1
A
82 111Right-handed alpha
Helix 11
AB2
A
114 141Right-handed alpha
Helix 12
AB3
A
151 167Right-handed alpha
Helix 13
AB4
A
175 202Right-handed alpha
Helix 14
AB5
C
-131 -127Right-handed 310
Helix 15
AB6
C
-119 -108Right-handed alpha
Helix 16
AB7
C
-54 -50Right-handed 310
Helix 17
AB8
C
-46 -34Right-handed alpha
Helix 18
AB9
C
-18 -5Right-handed alpha
Helix 19
AC1
C
11 26Right-handed alpha
Helix 20
AC2
C
29 49Right-handed alpha
Helix 21
AC3
C
53 78Right-handed alpha
Helix 22
AC4
C
82 111Right-handed alpha
Helix 23
AC5
C
114 141Right-handed alpha
Helix 24
AC6
C
151 167Right-handed alpha
Helix 25
AC7
C
175 202Right-handed alpha
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There are 6 sheets in PDB entry 6WMV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-106 -101first strand
Strand 2
A
-138 -133parallel
Strand 3
A
-91 -87parallel
Strand 4
A
-63 -56anti-parallel
Strand 5
A
-70 -66anti-parallel
Strand 6
A
-31 -28parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-125 -124first strand
Strand 2
A
-121 -120anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-83 -81first strand
Strand 2
A
-25 -23anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
-105 -101first strand
Strand 2
C
-138 -133parallel
Strand 3
C
-91 -87parallel
Strand 4
C
-63 -56anti-parallel
Strand 5
C
-70 -66anti-parallel
Strand 6
C
-31 -28parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
-125 -124first strand
Strand 2
C
-121 -120anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
-83 -81first strand
Strand 2
C
-25 -23anti-parallel
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