Analysis of interatomic Contacts of Structural Units in PDB entry:
6WMW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WMW entry

There are 5 chains in PDB entry 6WMW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	TRP 129	PRO 320
H	ILE 2	LYS 219
L	ASP 1	CYS 218
M	GLN 1	PRO 225
N	ASP 23	ARG 238

There are 27 helices in PDB entry 6WMW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	130	141	Right-handed alpha
Helix 2	AA2	B	141	155	Right-handed alpha
Helix 3	AA3	B	163	176	Right-handed alpha
Helix 4	AA4	B	179	189	Right-handed alpha
Helix 5	AA5	B	195	206	Right-handed alpha
Helix 6	AA6	B	207	212	Right-handed alpha
Helix 7	AA7	B	219	229	Right-handed alpha
Helix 8	AA8	B	230	245	Right-handed alpha
Helix 9	AA9	B	245	253	Right-handed alpha
Helix 10	AB1	B	255	261	Right-handed alpha
Helix 11	AB2	B	272	281	Right-handed alpha
Helix 12	AB3	B	285	289	Right-handed 310
Helix 13	AB4	B	300	312	Right-handed alpha
Helix 14	AB5	B	313	316	Right-handed 310
Helix 15	AB6	H	74	76	Right-handed 310
Helix 16	AB7	H	87	91	Right-handed 310
Helix 17	AB8	L	83	87	Right-handed 310
Helix 18	AB9	L	125	130	Right-handed alpha
Helix 19	AC1	L	187	191	Right-handed alpha
Helix 20	AC2	M	28	32	Right-handed 310
Helix 21	AC3	M	62	65	Right-handed 310
Helix 22	AC4	M	87	91	Right-handed 310
Helix 23	AC5	M	168	170	Right-handed 310
Helix 24	AC6	M	199	202	Right-handed 310
Helix 25	AC7	N	106	110	Right-handed 310
Helix 26	AC8	N	148	155	Right-handed alpha
Helix 27	AC9	N	210	216	Right-handed alpha

There are 25 sheets in PDB entry 6WMW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	68	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	105	108	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	126	first strand
Strand 2	H	147	150	anti-parallel
Strand 3	H	181	183	anti-parallel
Strand 4	H	174	175	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	141	143	first strand
Strand 2	H	185	189	anti-parallel
Strand 3	H	168	170	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	74	79	anti-parallel
Strand 4	L	66	71	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	106	111	parallel
Strand 3	L	88	94	anti-parallel
Strand 4	L	37	42	anti-parallel
Strand 5	L	49	53	anti-parallel
Strand 6	L	57	58	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	106	111	parallel
Strand 3	L	88	94	anti-parallel
Strand 4	L	101	102	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	31	first strand
Strand 2	L	34	35	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	120	121	first strand
Strand 2	L	138	143	anti-parallel
Strand 3	L	177	181	anti-parallel
Strand 4	L	165	167	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	133	136	first strand
Strand 2	L	183	186	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	150	153	first strand
Strand 2	L	195	200	anti-parallel
Strand 3	L	209	210	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	150	153	first strand
Strand 2	L	195	200	anti-parallel
Strand 3	L	213	214	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	6	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	78	83	anti-parallel
Strand 4	M	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	119	123	parallel
Strand 3	M	92	104	anti-parallel
Strand 4	M	33	39	anti-parallel
Strand 5	M	46	51	anti-parallel
Strand 6	M	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	119	123	parallel
Strand 3	M	92	104	anti-parallel
Strand 4	M	108	115	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	132	136	first strand
Strand 2	M	147	157	anti-parallel
Strand 3	M	187	197	anti-parallel
Strand 4	M	175	177	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	132	136	first strand
Strand 2	M	147	157	anti-parallel
Strand 3	M	187	197	anti-parallel
Strand 4	M	181	183	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	163	166	first strand
Strand 2	M	207	211	anti-parallel
Strand 3	M	219	222	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	26	29	first strand
Strand 2	N	41	47	anti-parallel
Strand 3	N	97	102	anti-parallel
Strand 4	N	89	94	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	32	35	first strand
Strand 2	N	129	133	parallel
Strand 3	N	112	117	anti-parallel
Strand 4	N	60	65	anti-parallel
Strand 5	N	72	76	anti-parallel
Strand 6	N	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	32	35	first strand
Strand 2	N	129	133	parallel
Strand 3	N	112	117	anti-parallel
Strand 4	N	124	125	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	141	142	first strand
Strand 2	N	163	166	anti-parallel
Strand 3	N	200	202	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	156	160	first strand
Strand 2	N	205	209	anti-parallel
Strand 3	N	186	187	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	171	175	first strand
Strand 2	N	221	225	anti-parallel
Strand 3	N	232	234	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WMW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WMW