Analysis of interatomic Contacts of Structural Units in PDB entry:
6WMZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WMZ entry

There are 4 chains in PDB entry 6WMZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 291	MET 589
B	LYS 68	HIS 307
C	TYR 293	GLU 584
D	GLY 54	HIS 307

There are 37 helices in PDB entry 6WMZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	309	316	Right-handed alpha
Helix 2	AA2	A	317	321	Right-handed 310
Helix 3	AA3	A	330	332	Right-handed 310
Helix 4	AA4	A	341	353	Right-handed alpha
Helix 5	AA5	A	383	392	Right-handed alpha
Helix 6	AA6	A	393	395	Right-handed 310
Helix 7	AA7	A	420	434	Right-handed alpha
Helix 8	AA8	A	460	465	Right-handed alpha
Helix 9	AA9	A	468	474	Right-handed alpha
Helix 10	AB1	A	485	524	Right-handed alpha
Helix 11	AB2	A	531	587	Right-handed alpha
Helix 12	AB3	B	71	73	Right-handed 310
Helix 13	AB4	B	86	94	Right-handed alpha
Helix 14	AB5	B	95	98	Right-handed 310
Helix 15	AB6	B	118	130	Right-handed alpha
Helix 16	AB7	B	160	169	Right-handed alpha
Helix 17	AB8	B	170	172	Right-handed 310
Helix 18	AB9	B	197	211	Right-handed alpha
Helix 19	AC1	B	244	251	Right-handed alpha
Helix 20	AC2	B	262	304	Right-handed alpha
Helix 21	AC3	C	294	296	Right-handed 310
Helix 22	AC4	C	311	317	Right-handed alpha
Helix 23	AC5	C	318	321	Right-handed 310
Helix 24	AC6	C	341	353	Right-handed alpha
Helix 25	AC7	C	383	392	Right-handed alpha
Helix 26	AC8	C	393	395	Right-handed 310
Helix 27	AC9	C	421	434	Right-handed alpha
Helix 28	AD1	C	460	465	Right-handed alpha
Helix 29	AD2	C	467	474	Right-handed alpha
Helix 30	AD3	C	485	584	Right-handed alpha
Helix 31	AD4	D	71	73	Right-handed 310
Helix 32	AD5	D	86	94	Right-handed alpha
Helix 33	AD6	D	118	130	Right-handed alpha
Helix 34	AD7	D	160	169	Right-handed alpha
Helix 35	AD8	D	197	211	Right-handed alpha
Helix 36	AD9	D	244	251	Right-handed alpha
Helix 37	AE1	D	262	304	Right-handed alpha

There are 14 sheets in PDB entry 6WMZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	329	first strand
Strand 2	A	334	338	anti-parallel
Strand 3	A	298	302	anti-parallel
Strand 4	A	363	366	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	357	first strand
Strand 2	A	360	361	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	404	first strand
Strand 2	A	410	418	anti-parallel
Strand 3	A	372	376	anti-parallel
Strand 4	A	446	449	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	480	first strand
Strand 2	B	213	214	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	106	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	75	79	anti-parallel
Strand 4	B	140	143	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	134	first strand
Strand 2	B	137	138	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	181	first strand
Strand 2	B	187	195	anti-parallel
Strand 3	B	149	153	anti-parallel
Strand 4	B	223	226	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	338	first strand
Strand 2	C	298	302	anti-parallel
Strand 3	C	363	365	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	404	first strand
Strand 2	C	410	418	anti-parallel
Strand 3	C	372	376	anti-parallel
Strand 4	C	446	449	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	436	437	first strand
Strand 2	D	256	257	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	479	480	first strand
Strand 2	D	213	214	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	105	first strand
Strand 2	D	111	115	anti-parallel
Strand 3	D	75	79	anti-parallel
Strand 4	D	140	143	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	134	first strand
Strand 2	D	137	138	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	181	first strand
Strand 2	D	187	195	anti-parallel
Strand 3	D	149	153	anti-parallel
Strand 4	D	223	226	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WMZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WMZ