Analysis of interatomic Contacts of Structural Units in PDB entry:
6WN8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WN8 entry

There are 7 chains in PDB entry 6WN8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 0	LYS 208
B	ASN -1	LYS 208
C	ASN -1	LYS 208
D	ASN -1	LYS 208
E	ASN -1	LYS 208
F	ALA 0	LYS 208
G	ALA 0	PRO 60

There are 72 helices in PDB entry 6WN8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	19	Right-handed alpha
Helix 2	AA2	A	24	44	Right-handed alpha
Helix 3	AA3	A	80	89	Right-handed alpha
Helix 4	AA4	A	120	123	Right-handed 310
Helix 5	AA5	A	136	149	Right-handed alpha
Helix 6	AA6	A	162	173	Right-handed alpha
Helix 7	AA7	A	199	206	Right-handed alpha
Helix 8	AA8	B	8	19	Right-handed alpha
Helix 9	AA9	B	24	44	Right-handed alpha
Helix 10	AB1	B	80	91	Right-handed alpha
Helix 11	AB2	B	120	123	Right-handed 310
Helix 12	AB3	B	136	149	Right-handed alpha
Helix 13	AB4	B	162	173	Right-handed alpha
Helix 14	AB5	B	199	206	Right-handed alpha
Helix 15	AB6	C	8	19	Right-handed alpha
Helix 16	AB7	C	24	44	Right-handed alpha
Helix 17	AB8	C	80	89	Right-handed alpha
Helix 18	AB9	C	120	123	Right-handed 310
Helix 19	AC1	C	136	149	Right-handed alpha
Helix 20	AC2	C	162	173	Right-handed alpha
Helix 21	AC3	C	199	206	Right-handed alpha
Helix 22	AC4	D	8	19	Right-handed alpha
Helix 23	AC5	D	24	44	Right-handed alpha
Helix 24	AC6	D	78	82	Right-handed 310
Helix 25	AC7	D	83	89	Right-handed alpha
Helix 26	AC8	D	120	123	Right-handed 310
Helix 27	AC9	D	136	149	Right-handed alpha
Helix 28	AD1	D	162	173	Right-handed alpha
Helix 29	AD2	D	199	206	Right-handed alpha
Helix 30	AD3	E	8	19	Right-handed alpha
Helix 31	AD4	E	24	44	Right-handed alpha
Helix 32	AD5	E	78	82	Right-handed 310
Helix 33	AD6	E	83	89	Right-handed alpha
Helix 34	AD7	E	120	123	Right-handed 310
Helix 35	AD8	E	136	149	Right-handed alpha
Helix 36	AD9	E	162	173	Right-handed alpha
Helix 37	AE1	E	199	206	Right-handed alpha
Helix 38	AE2	F	8	19	Right-handed alpha
Helix 39	AE3	F	24	44	Right-handed alpha
Helix 40	AE4	F	80	91	Right-handed alpha
Helix 41	AE5	F	120	123	Right-handed 310
Helix 42	AE6	F	136	150	Right-handed alpha
Helix 43	AE7	F	162	173	Right-handed alpha
Helix 44	AE8	F	199	206	Right-handed alpha
Helix 45	AE9	G	8	19	Right-handed alpha
Helix 46	AF1	G	24	44	Right-handed alpha
Helix 47	AF2	G	80	91	Right-handed alpha
Helix 48	AF3	G	120	123	Right-handed 310
Helix 49	AF4	G	136	150	Right-handed alpha
Helix 50	AF5	G	162	173	Right-handed alpha
Helix 51	AF6	G	199	206	Right-handed alpha
Helix 52	AF7	H	8	19	Right-handed alpha
Helix 53	AF8	H	24	44	Right-handed alpha
Helix 54	AF9	H	80	89	Right-handed alpha
Helix 55	AG1	H	120	124	Right-handed 310
Helix 56	AG2	H	136	150	Right-handed alpha
Helix 57	AG3	H	162	173	Right-handed alpha
Helix 58	AG4	H	199	206	Right-handed alpha
Helix 59	AG5	I	8	19	Right-handed alpha
Helix 60	AG6	I	24	44	Right-handed alpha
Helix 61	AG7	I	80	88	Right-handed alpha
Helix 62	AG8	I	120	123	Right-handed 310
Helix 63	AG9	I	136	150	Right-handed alpha
Helix 64	AH1	I	162	173	Right-handed alpha
Helix 65	AH2	I	199	206	Right-handed alpha
Helix 66	AH3	J	8	19	Right-handed alpha
Helix 67	AH4	J	24	44	Right-handed alpha
Helix 68	AH5	J	80	88	Right-handed alpha
Helix 69	AH6	J	120	123	Right-handed 310
Helix 70	AH7	J	136	150	Right-handed alpha
Helix 71	AH8	J	162	173	Right-handed alpha
Helix 72	AH9	J	199	206	Right-handed alpha

There are 48 sheets in PDB entry 6WN8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	A	177	180	parallel
Strand 3	A	153	158	parallel
Strand 4	A	125	129	parallel
Strand 5	A	72	77	parallel
Strand 6	A	95	96	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	A	177	180	parallel
Strand 3	A	153	158	parallel
Strand 4	A	125	129	parallel
Strand 5	A	72	77	parallel
Strand 6	A	98	103	parallel
Strand 7	A	110	116	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	56	first strand
Strand 2	A	59	66	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	133	first strand
Strand 2	A	160	161	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	187	first strand
Strand 2	A	193	194	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	177	183	parallel
Strand 3	B	153	161	parallel
Strand 4	B	125	129	parallel
Strand 5	B	72	75	parallel
Strand 6	B	95	96	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	177	183	parallel
Strand 3	B	153	161	parallel
Strand 4	B	132	133	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	56	first strand
Strand 2	B	59	66	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	102	first strand
Strand 2	B	111	116	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	187	first strand
Strand 2	B	193	194	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	177	180	parallel
Strand 3	C	153	158	parallel
Strand 4	C	125	129	parallel
Strand 5	C	72	77	parallel
Strand 6	C	95	96	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	177	180	parallel
Strand 3	C	153	158	parallel
Strand 4	C	125	129	parallel
Strand 5	C	72	77	parallel
Strand 6	C	98	103	parallel
Strand 7	C	110	116	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	56	first strand
Strand 2	C	59	66	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	133	first strand
Strand 2	C	160	161	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	187	first strand
Strand 2	C	193	194	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	5	first strand
Strand 2	D	177	183	parallel
Strand 3	D	153	161	parallel
Strand 4	D	125	129	parallel
Strand 5	D	72	75	parallel
Strand 6	D	95	96	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	5	first strand
Strand 2	D	177	183	parallel
Strand 3	D	153	161	parallel
Strand 4	D	132	133	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	56	first strand
Strand 2	D	59	66	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	101	first strand
Strand 2	D	112	116	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	187	first strand
Strand 2	D	193	194	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	5	first strand
Strand 2	E	177	183	parallel
Strand 3	E	153	161	parallel
Strand 4	E	125	129	parallel
Strand 5	E	72	75	parallel
Strand 6	E	95	96	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	5	first strand
Strand 2	E	177	183	parallel
Strand 3	E	153	161	parallel
Strand 4	E	132	133	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	56	first strand
Strand 2	E	59	66	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	102	first strand
Strand 2	E	111	115	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	186	187	first strand
Strand 2	E	193	194	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	5	first strand
Strand 2	F	177	180	parallel
Strand 3	F	153	158	parallel
Strand 4	F	125	129	parallel
Strand 5	F	72	77	parallel
Strand 6	F	95	96	parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	5	first strand
Strand 2	F	177	180	parallel
Strand 3	F	153	158	parallel
Strand 4	F	125	129	parallel
Strand 5	F	72	77	parallel
Strand 6	F	98	103	parallel
Strand 7	F	110	116	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	55	first strand
Strand 2	F	60	66	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	133	first strand
Strand 2	F	160	161	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	186	187	first strand
Strand 2	F	193	194	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	5	first strand
Strand 2	G	177	180	parallel
Strand 3	G	153	158	parallel
Strand 4	G	125	129	parallel
Strand 5	G	72	77	parallel
Strand 6	G	95	96	parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	5	first strand
Strand 2	G	177	180	parallel
Strand 3	G	153	158	parallel
Strand 4	G	125	129	parallel
Strand 5	G	72	77	parallel
Strand 6	G	98	103	parallel
Strand 7	G	110	116	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	49	55	first strand
Strand 2	G	60	66	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	132	133	first strand
Strand 2	G	160	161	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	186	187	first strand
Strand 2	G	193	194	anti-parallel

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There are 7 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	177	183	parallel
Strand 3	H	154	161	parallel
Strand 4	H	126	129	parallel
Strand 5	H	72	77	parallel
Strand 6	H	98	103	parallel
Strand 7	H	110	116	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	95	96	first strand
Strand 2	H	72	77	parallel
Strand 3	H	126	129	parallel
Strand 4	H	154	161	parallel
Strand 5	H	132	133	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	56	first strand
Strand 2	H	59	66	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	186	187	first strand
Strand 2	H	193	194	anti-parallel

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There are 7 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	5	first strand
Strand 2	I	177	183	parallel
Strand 3	I	153	161	parallel
Strand 4	I	125	129	parallel
Strand 5	I	72	77	parallel
Strand 6	I	98	103	parallel
Strand 7	I	110	116	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	95	96	first strand
Strand 2	I	72	77	parallel
Strand 3	I	125	129	parallel
Strand 4	I	153	161	parallel
Strand 5	I	132	133	parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	49	56	first strand
Strand 2	I	59	66	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	186	187	first strand
Strand 2	I	193	194	anti-parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2	5	first strand
Strand 2	J	177	180	parallel
Strand 3	J	153	158	parallel
Strand 4	J	125	129	parallel
Strand 5	J	72	77	parallel
Strand 6	J	95	96	parallel

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There are 7 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2	5	first strand
Strand 2	J	177	180	parallel
Strand 3	J	153	158	parallel
Strand 4	J	125	129	parallel
Strand 5	J	72	77	parallel
Strand 6	J	98	103	parallel
Strand 7	J	110	116	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	49	56	first strand
Strand 2	J	59	66	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	132	133	first strand
Strand 2	J	160	161	parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	186	187	first strand
Strand 2	J	193	194	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WN8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WN8