Analysis of interatomic Contacts of Structural Units in PDB entry:
6WNB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WNB entry

There are 3 chains in PDB entry 6WNB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	CYS 334
B	THR 2	CYS 334
C	MET 1	CYS 334

There are 29 helices in PDB entry 6WNB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	10	Right-handed alpha
Helix 2	AA2	A	19	21	Right-handed 310
Helix 3	AA3	A	61	65	Right-handed 310
Helix 4	AA4	A	151	161	Right-handed alpha
Helix 5	AA5	A	164	169	Right-handed alpha
Helix 6	AA6	A	262	264	Right-handed 310
Helix 7	AA7	A	265	287	Right-handed alpha
Helix 8	AA8	A	311	313	Right-handed 310
Helix 9	AA9	A	314	327	Right-handed alpha
Helix 10	AB1	B	5	10	Right-handed alpha
Helix 11	AB2	B	19	21	Right-handed 310
Helix 12	AB3	B	61	65	Right-handed 310
Helix 13	AB4	B	130	135	Right-handed 310
Helix 14	AB5	B	151	161	Right-handed alpha
Helix 15	AB6	B	164	169	Right-handed alpha
Helix 16	AB7	B	262	264	Right-handed 310
Helix 17	AB8	B	265	287	Right-handed alpha
Helix 18	AB9	B	311	313	Right-handed 310
Helix 19	AC1	B	314	327	Right-handed alpha
Helix 20	AC2	C	5	10	Right-handed alpha
Helix 21	AC3	C	19	21	Right-handed 310
Helix 22	AC4	C	61	65	Right-handed 310
Helix 23	AC5	C	130	135	Right-handed 310
Helix 24	AC6	C	151	161	Right-handed alpha
Helix 25	AC7	C	164	169	Right-handed alpha
Helix 26	AC8	C	262	264	Right-handed 310
Helix 27	AC9	C	265	287	Right-handed alpha
Helix 28	AD1	C	311	313	Right-handed 310
Helix 29	AD2	C	314	327	Right-handed alpha

There are 16 sheets in PDB entry 6WNB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	17	first strand
Strand 2	A	115	119	anti-parallel
Strand 3	A	108	112	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	31	first strand
Strand 2	A	34	39	anti-parallel
Strand 3	A	49	52	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	68	first strand
Strand 2	A	71	73	anti-parallel
Strand 3	A	80	82	anti-parallel
Strand 4	A	87	89	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	142	first strand
Strand 2	A	250	259	anti-parallel
Strand 3	A	146	148	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	142	first strand
Strand 2	A	250	259	anti-parallel
Strand 3	A	236	247	anti-parallel
Strand 4	A	225	231	anti-parallel
Strand 5	A	214	222	anti-parallel
Strand 6	A	192	200	anti-parallel
Strand 7	A	186	189	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	A	333	334	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	17	first strand
Strand 2	B	115	119	anti-parallel
Strand 3	B	106	112	anti-parallel
Strand 4	B	48	52	anti-parallel
Strand 5	B	34	40	anti-parallel
Strand 6	B	26	31	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	71	73	anti-parallel
Strand 3	B	80	81	anti-parallel
Strand 4	B	87	89	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	142	first strand
Strand 2	B	250	259	anti-parallel
Strand 3	B	146	148	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	142	first strand
Strand 2	B	250	259	anti-parallel
Strand 3	B	236	247	anti-parallel
Strand 4	B	225	231	anti-parallel
Strand 5	B	213	220	anti-parallel
Strand 6	B	192	201	anti-parallel
Strand 7	B	186	189	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	17	first strand
Strand 2	C	115	119	anti-parallel
Strand 3	C	108	112	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	31	first strand
Strand 2	C	34	39	anti-parallel
Strand 3	C	49	52	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	68	first strand
Strand 2	C	71	73	anti-parallel
Strand 3	C	80	82	anti-parallel
Strand 4	C	87	89	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	142	first strand
Strand 2	C	250	259	anti-parallel
Strand 3	C	146	148	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	142	first strand
Strand 2	C	250	259	anti-parallel
Strand 3	C	236	247	anti-parallel
Strand 4	C	225	231	anti-parallel
Strand 5	C	215	220	anti-parallel
Strand 6	C	192	198	anti-parallel
Strand 7	C	186	189	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	292	293	first strand
Strand 2	C	333	334	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WNB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WNB