Analysis of interatomic Contacts of Structural Units in PDB entry:
6WNI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WNI entry

There are 2 chains in PDB entry 6WNI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 30	VAL 523
B	PRO 31	VAL 523

There are 40 helices in PDB entry 6WNI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	44	Right-handed 310
Helix 2	AA2	A	48	52	Right-handed 310
Helix 3	AA3	A	54	58	Right-handed 310
Helix 4	AA4	A	75	82	Right-handed alpha
Helix 5	AA5	A	82	88	Right-handed alpha
Helix 6	AA6	A	134	148	Right-handed alpha
Helix 7	AA7	A	206	213	Right-handed alpha
Helix 8	AA8	A	225	242	Right-handed alpha
Helix 9	AA9	A	251	255	Right-handed 310
Helix 10	AB1	A	256	271	Right-handed alpha
Helix 11	AB2	A	289	300	Right-handed alpha
Helix 12	AB3	A	306	319	Right-handed alpha
Helix 13	AB4	A	322	337	Right-handed alpha
Helix 14	AB5	A	339	342	Right-handed 310
Helix 15	AB6	A	354	359	Right-handed alpha
Helix 16	AB7	A	361	374	Right-handed alpha
Helix 17	AB8	A	384	388	Right-handed 310
Helix 18	AB9	A	392	397	Right-handed 310
Helix 19	AC1	A	412	428	Right-handed alpha
Helix 20	AC2	A	429	434	Right-handed alpha
Helix 21	AC3	B	40	44	Right-handed 310
Helix 22	AC4	B	48	52	Right-handed 310
Helix 23	AC5	B	54	58	Right-handed 310
Helix 24	AC6	B	75	82	Right-handed alpha
Helix 25	AC7	B	82	88	Right-handed alpha
Helix 26	AC8	B	134	148	Right-handed alpha
Helix 27	AC9	B	206	213	Right-handed alpha
Helix 28	AD1	B	225	242	Right-handed alpha
Helix 29	AD2	B	251	255	Right-handed 310
Helix 30	AD3	B	256	271	Right-handed alpha
Helix 31	AD4	B	289	300	Right-handed alpha
Helix 32	AD5	B	306	319	Right-handed alpha
Helix 33	AD6	B	322	337	Right-handed alpha
Helix 34	AD7	B	339	342	Right-handed 310
Helix 35	AD8	B	354	359	Right-handed alpha
Helix 36	AD9	B	361	374	Right-handed alpha
Helix 37	AE1	B	384	388	Right-handed 310
Helix 38	AE2	B	392	397	Right-handed 310
Helix 39	AE3	B	412	428	Right-handed alpha
Helix 40	AE4	B	429	434	Right-handed alpha

There are 17 sheets in PDB entry 6WNI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	304	first strand
Strand 2	A	275	278	parallel
Strand 3	A	246	249	parallel
Strand 4	A	151	156	parallel
Strand 5	A	93	96	parallel
Strand 6	A	36	39	parallel
Strand 7	A	378	382	parallel
Strand 8	A	344	345	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	122	128	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	109	first strand
Strand 2	A	112	114	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	163	first strand
Strand 2	A	218	220	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	179	first strand
Strand 2	A	182	185	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	441	first strand
Strand 2	A	445	452	anti-parallel
Strand 3	A	455	462	anti-parallel
Strand 4	A	514	519	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	474	first strand
Strand 2	A	503	510	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	481	first strand
Strand 2	A	494	496	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	304	first strand
Strand 2	B	275	278	parallel
Strand 3	B	246	249	parallel
Strand 4	B	151	156	parallel
Strand 5	B	93	96	parallel
Strand 6	B	36	39	parallel
Strand 7	B	378	382	parallel
Strand 8	B	344	345	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	122	128	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	109	first strand
Strand 2	B	112	114	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	163	first strand
Strand 2	B	218	220	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	179	first strand
Strand 2	B	182	185	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	441	first strand
Strand 2	B	445	452	anti-parallel
Strand 3	B	455	462	anti-parallel
Strand 4	B	514	519	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	469	first strand
Strand 2	B	508	510	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	474	first strand
Strand 2	B	503	505	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	481	first strand
Strand 2	B	494	496	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WNI

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WNI