Analysis of interatomic Contacts of Structural Units in PDB entry:
6WNL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WNL entry

There are 2 chains in PDB entry 6WNL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3SER 361
B
 SER 3SER 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6WNL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 26Right-handed 310
Helix 2
AA2
A
35 39Right-handed 310
Helix 3
AA3
A
44 53Right-handed alpha
Helix 4
AA4
A
62 72Right-handed alpha
Helix 5
AA5
A
73 80Right-handed 310
Helix 6
AA6
A
143 149Right-handed 310
Helix 7
AA7
A
170 174Right-handed 310
Helix 8
AA8
A
178 195Right-handed alpha
Helix 9
AA9
A
212 224Right-handed alpha
Helix 10
AB1
A
232 236Right-handed 310
Helix 11
AB2
A
238 243Right-handed alpha
Helix 12
AB3
A
260 267Right-handed alpha
Helix 13
AB4
A
321 333Right-handed alpha
Helix 14
AB5
A
347 356Right-handed alpha
Helix 15
AB6
A
357 359Right-handed 310
Helix 16
AB7
B
20 26Right-handed 310
Helix 17
AB8
B
35 39Right-handed 310
Helix 18
AB9
B
44 53Right-handed alpha
Helix 19
AC1
B
62 72Right-handed alpha
Helix 20
AC2
B
73 80Right-handed 310
Helix 21
AC3
B
143 149Right-handed 310
Helix 22
AC4
B
170 174Right-handed 310
Helix 23
AC5
B
178 195Right-handed alpha
Helix 24
AC6
B
212 224Right-handed alpha
Helix 25
AC7
B
232 236Right-handed 310
Helix 26
AC8
B
238 243Right-handed alpha
Helix 27
AC9
B
260 267Right-handed alpha
Helix 28
AD1
B
321 333Right-handed alpha
Helix 29
AD2
B
347 356Right-handed alpha
Helix 30
AD3
B
357 359Right-handed 310
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There are 10 sheets in PDB entry 6WNL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
29 30parallel
Strand 3
A
59 61parallel
Strand 4
A
82 84parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 96first strand
Strand 2
A
103 112anti-parallel
Strand 3
A
120 125anti-parallel
Strand 4
A
131 133anti-parallel
Strand 5
A
161 164parallel
Strand 6
A
336 339parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
155 156anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
227 228parallel
Strand 3
A
253 254parallel
Strand 4
A
200 204parallel
Strand 5
A
283 290parallel
Strand 6
A
311 315parallel
Strand 7
A
304 308anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 277first strand
Strand 2
A
280 281anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 16first strand
Strand 2
B
28 30parallel
Strand 3
B
59 61parallel
Strand 4
B
82 84parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 96first strand
Strand 2
B
103 112anti-parallel
Strand 3
B
120 125anti-parallel
Strand 4
B
131 133anti-parallel
Strand 5
B
161 164parallel
Strand 6
B
336 339parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
155 156anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 246first strand
Strand 2
B
227 228parallel
Strand 3
B
253 254parallel
Strand 4
B
200 204parallel
Strand 5
B
283 290parallel
Strand 6
B
311 315parallel
Strand 7
B
304 306anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 277first strand
Strand 2
B
280 281anti-parallel
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