Analysis of interatomic Contacts of Structural Units in PDB entry:
6WNX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WNX entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 11 chains in PDB entry 6WNX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 410
B	PRO 2	GLU 143
C	LEU 31	ASP 32
C	GLY 34	HIS 36
C	GLY 38	ALA 39
D	LEU 2	VAL 409
E	ILE 4	ASN 139
F	LEU 31	ASP 32
F	GLY 34	HIS 36
F	GLY 38	ALA 39
G	MET 1	GLY 143

There are 57 helices in PDB entry 6WNX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	13	Right-handed alpha
Helix 2	AA2	A	15	24	Right-handed alpha
Helix 3	AA3	A	27	36	Right-handed alpha
Helix 4	AA4	A	38	48	Right-handed alpha
Helix 5	AA5	A	49	62	Right-handed alpha
Helix 6	AA6	A	62	72	Right-handed alpha
Helix 7	AA7	A	74	78	Right-handed 310
Helix 8	AA8	A	88	113	Right-handed alpha
Helix 9	AA9	A	357	362	Right-handed alpha
Helix 10	AB1	A	366	369	Right-handed 310
Helix 11	AB2	B	18	22	Right-handed alpha
Helix 12	AB3	B	24	33	Right-handed alpha
Helix 13	AB4	B	45	59	Right-handed alpha
Helix 14	AB5	B	68	75	Right-handed alpha
Helix 15	AB6	B	78	93	Right-handed alpha
Helix 16	AB7	B	94	110	Right-handed alpha
Helix 17	AB8	B	113	122	Right-handed alpha
Helix 18	AB9	B	128	140	Right-handed alpha
Helix 19	AC1	B	141	143	Right-handed 310
Helix 20	AC2	D	8	13	Right-handed alpha
Helix 21	AC3	D	15	24	Right-handed alpha
Helix 22	AC4	D	27	36	Right-handed alpha
Helix 23	AC5	D	38	48	Right-handed alpha
Helix 24	AC6	D	49	62	Right-handed alpha
Helix 25	AC7	D	62	72	Right-handed alpha
Helix 26	AC8	D	74	78	Right-handed 310
Helix 27	AC9	D	88	113	Right-handed alpha
Helix 28	AD1	D	357	362	Right-handed alpha
Helix 29	AD2	D	366	369	Right-handed 310
Helix 30	AD3	E	17	22	Right-handed alpha
Helix 31	AD4	E	24	33	Right-handed alpha
Helix 32	AD5	E	45	56	Right-handed alpha
Helix 33	AD6	E	69	74	Right-handed alpha
Helix 34	AD7	E	79	93	Right-handed alpha
Helix 35	AD8	E	96	110	Right-handed alpha
Helix 36	AD9	E	113	122	Right-handed alpha
Helix 37	AE1	E	128	139	Right-handed alpha
Helix 38	AE2	G	5	13	Right-handed alpha
Helix 39	AE3	G	15	24	Right-handed alpha
Helix 40	AE4	G	27	36	Right-handed alpha
Helix 41	AE5	G	38	48	Right-handed alpha
Helix 42	AE6	G	49	62	Right-handed alpha
Helix 43	AE7	G	62	72	Right-handed alpha
Helix 44	AE8	G	74	78	Right-handed 310
Helix 45	AE9	G	88	113	Right-handed alpha
Helix 46	AF1	G	357	362	Right-handed alpha
Helix 47	AF2	G	366	369	Right-handed 310
Helix 48	AF3	H	18	22	Right-handed alpha
Helix 49	AF4	H	24	33	Right-handed alpha
Helix 50	AF5	H	45	59	Right-handed alpha
Helix 51	AF6	H	62	67	Right-handed alpha
Helix 52	AF7	H	69	75	Right-handed alpha
Helix 53	AF8	H	78	93	Right-handed alpha
Helix 54	AF9	H	94	110	Right-handed alpha
Helix 55	AG1	H	113	122	Right-handed alpha
Helix 56	AG2	H	128	140	Right-handed alpha
Helix 57	AG3	H	141	143	Right-handed 310

There are 24 sheets in PDB entry 6WNX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	121	first strand
Strand 2	A	400	405	anti-parallel
Strand 3	A	391	396	anti-parallel
Strand 4	A	382	388	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	135	first strand
Strand 2	A	139	144	anti-parallel
Strand 3	A	149	153	anti-parallel
Strand 4	A	159	163	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	175	first strand
Strand 2	A	179	184	anti-parallel
Strand 3	A	188	193	anti-parallel
Strand 4	A	199	204	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	216	first strand
Strand 2	A	219	224	anti-parallel
Strand 3	A	228	234	anti-parallel
Strand 4	A	240	247	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	258	first strand
Strand 2	A	262	267	anti-parallel
Strand 3	A	272	276	anti-parallel
Strand 4	A	282	286	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	299	first strand
Strand 2	A	302	307	anti-parallel
Strand 3	A	312	316	anti-parallel
Strand 4	A	322	326	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	338	first strand
Strand 2	A	342	347	anti-parallel
Strand 3	A	351	356	anti-parallel
Strand 4	A	371	376	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	17	first strand
Strand 2	B	3	7	anti-parallel
Strand 3	B	39	40	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	121	first strand
Strand 2	D	400	405	anti-parallel
Strand 3	D	391	396	anti-parallel
Strand 4	D	382	387	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	135	first strand
Strand 2	D	139	144	anti-parallel
Strand 3	D	149	153	anti-parallel
Strand 4	D	159	163	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	175	first strand
Strand 2	D	179	184	anti-parallel
Strand 3	D	189	193	anti-parallel
Strand 4	D	199	203	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	216	first strand
Strand 2	D	219	224	anti-parallel
Strand 3	D	228	234	anti-parallel
Strand 4	D	240	247	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	253	258	first strand
Strand 2	D	262	267	anti-parallel
Strand 3	D	272	276	anti-parallel
Strand 4	D	282	286	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	293	299	first strand
Strand 2	D	302	307	anti-parallel
Strand 3	D	312	316	anti-parallel
Strand 4	D	322	326	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	338	first strand
Strand 2	D	342	347	anti-parallel
Strand 3	D	351	356	anti-parallel
Strand 4	D	371	376	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	15	first strand
Strand 2	E	5	8	anti-parallel
Strand 3	E	39	41	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	121	first strand
Strand 2	G	400	405	anti-parallel
Strand 3	G	391	396	anti-parallel
Strand 4	G	382	387	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	130	135	first strand
Strand 2	G	139	144	anti-parallel
Strand 3	G	149	153	anti-parallel
Strand 4	G	159	163	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	170	175	first strand
Strand 2	G	179	184	anti-parallel
Strand 3	G	189	193	anti-parallel
Strand 4	G	199	203	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	210	216	first strand
Strand 2	G	219	224	anti-parallel
Strand 3	G	228	234	anti-parallel
Strand 4	G	240	247	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	253	258	first strand
Strand 2	G	262	267	anti-parallel
Strand 3	G	272	276	anti-parallel
Strand 4	G	282	286	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	293	299	first strand
Strand 2	G	302	307	anti-parallel
Strand 3	G	312	316	anti-parallel
Strand 4	G	322	326	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	333	338	first strand
Strand 2	G	342	347	anti-parallel
Strand 3	G	351	356	anti-parallel
Strand 4	G	371	376	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	17	first strand
Strand 2	H	3	8	anti-parallel
Strand 3	H	39	41	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WNX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WNX