Analysis of interatomic Contacts of Structural Units in PDB entry:
6WOM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WOM entry

There are 3 chains in PDB entry 6WOM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	ILE 582
B	HIS 0	ILE 582
C	MET 1	ARG 133

There are 61 helices in PDB entry 6WOM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	15	Right-handed 310
Helix 2	AA2	A	51	55	Right-handed 310
Helix 3	AA3	A	56	64	Right-handed alpha
Helix 4	AA4	A	120	127	Right-handed alpha
Helix 5	AA5	A	127	132	Right-handed alpha
Helix 6	AA6	A	134	158	Right-handed alpha
Helix 7	AA7	A	197	207	Right-handed alpha
Helix 8	AA8	A	243	264	Right-handed alpha
Helix 9	AA9	A	275	283	Right-handed alpha
Helix 10	AB1	A	298	303	Right-handed alpha
Helix 11	AB2	A	307	313	Right-handed alpha
Helix 12	AB3	A	328	341	Right-handed alpha
Helix 13	AB4	A	369	381	Right-handed alpha
Helix 14	AB5	A	394	413	Right-handed alpha
Helix 15	AB6	A	452	459	Right-handed 310
Helix 16	AB7	A	462	466	Right-handed 310
Helix 17	AB8	A	489	500	Right-handed alpha
Helix 18	AB9	A	503	519	Right-handed alpha
Helix 19	AC1	A	532	540	Right-handed alpha
Helix 20	AC2	A	545	549	Right-handed 310
Helix 21	AC3	A	569	577	Right-handed alpha
Helix 22	AC4	B	11	15	Right-handed 310
Helix 23	AC5	B	53	55	Right-handed 310
Helix 24	AC6	B	56	65	Right-handed alpha
Helix 25	AC7	B	120	127	Right-handed alpha
Helix 26	AC8	B	127	132	Right-handed alpha
Helix 27	AC9	B	134	158	Right-handed alpha
Helix 28	AD1	B	197	207	Right-handed alpha
Helix 29	AD2	B	243	264	Right-handed alpha
Helix 30	AD3	B	275	283	Right-handed alpha
Helix 31	AD4	B	298	303	Right-handed alpha
Helix 32	AD5	B	307	313	Right-handed alpha
Helix 33	AD6	B	328	341	Right-handed alpha
Helix 34	AD7	B	369	381	Right-handed alpha
Helix 35	AD8	B	394	413	Right-handed alpha
Helix 36	AD9	B	452	459	Right-handed 310
Helix 37	AE1	B	462	466	Right-handed 310
Helix 38	AE2	B	489	500	Right-handed alpha
Helix 39	AE3	B	503	519	Right-handed alpha
Helix 40	AE4	B	532	540	Right-handed alpha
Helix 41	AE5	B	545	549	Right-handed 310
Helix 42	AE6	B	569	576	Right-handed alpha
Helix 43	AE7	C	57	64	Right-handed alpha
Helix 44	AE8	C	120	127	Right-handed alpha
Helix 45	AE9	C	127	132	Right-handed alpha
Helix 46	AF1	C	134	158	Right-handed alpha
Helix 47	AF2	C	197	207	Right-handed alpha
Helix 48	AF3	C	243	264	Right-handed alpha
Helix 49	AF4	C	275	283	Right-handed alpha
Helix 50	AF5	C	298	303	Right-handed alpha
Helix 51	AF6	C	307	313	Right-handed alpha
Helix 52	AF7	C	328	341	Right-handed alpha
Helix 53	AF8	C	369	381	Right-handed alpha
Helix 54	AF9	C	394	413	Right-handed alpha
Helix 55	AG1	C	452	460	Right-handed 310
Helix 56	AG2	C	462	466	Right-handed 310
Helix 57	AG3	C	489	500	Right-handed alpha
Helix 58	AG4	C	503	519	Right-handed alpha
Helix 59	AG5	C	532	540	Right-handed alpha
Helix 60	AG6	C	545	549	Right-handed 310
Helix 61	AG7	C	569	576	Right-handed alpha

There are 16 sheets in PDB entry 6WOM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	31	first strand
Strand 2	A	34	41	anti-parallel
Strand 3	A	44	50	anti-parallel
Strand 4	A	93	104	parallel
Strand 5	A	71	80	anti-parallel
Strand 6	A	18	31	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	162	first strand
Strand 2	A	211	219	parallel
Strand 3	A	231	240	anti-parallel
Strand 4	A	525	531	anti-parallel
Strand 5	A	478	486	anti-parallel
Strand 6	A	470	475	anti-parallel
Strand 7	A	423	427	anti-parallel
Strand 8	A	272	274	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	182	first strand
Strand 2	A	190	192	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	297	first strand
Strand 2	A	315	321	anti-parallel
Strand 3	A	387	393	anti-parallel
Strand 4	A	350	354	anti-parallel
Strand 5	A	360	362	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	432	435	first strand
Strand 2	A	440	443	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	578	580	first strand
Strand 2	B	578	580	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	30	first strand
Strand 2	B	34	41	anti-parallel
Strand 3	B	44	51	anti-parallel
Strand 4	B	93	104	parallel
Strand 5	B	71	80	anti-parallel
Strand 6	B	18	30	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	162	first strand
Strand 2	B	211	219	parallel
Strand 3	B	231	240	anti-parallel
Strand 4	B	525	531	anti-parallel
Strand 5	B	478	484	anti-parallel
Strand 6	B	470	475	anti-parallel
Strand 7	B	423	427	anti-parallel
Strand 8	B	272	274	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	182	first strand
Strand 2	B	190	192	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	297	first strand
Strand 2	B	315	321	anti-parallel
Strand 3	B	387	393	anti-parallel
Strand 4	B	350	354	anti-parallel
Strand 5	B	360	362	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	432	435	first strand
Strand 2	B	440	443	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	29	first strand
Strand 2	C	36	41	anti-parallel
Strand 3	C	44	49	anti-parallel
Strand 4	C	94	104	parallel
Strand 5	C	71	79	anti-parallel
Strand 6	C	18	29	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	162	first strand
Strand 2	C	211	219	parallel
Strand 3	C	231	240	anti-parallel
Strand 4	C	525	531	anti-parallel
Strand 5	C	478	485	anti-parallel
Strand 6	C	470	475	anti-parallel
Strand 7	C	423	427	anti-parallel
Strand 8	C	272	274	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	183	first strand
Strand 2	C	189	192	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	297	first strand
Strand 2	C	315	321	anti-parallel
Strand 3	C	387	393	anti-parallel
Strand 4	C	350	354	anti-parallel
Strand 5	C	360	362	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	432	434	first strand
Strand 2	C	441	443	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WOM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WOM