Analysis of interatomic Contacts of Structural Units in PDB entry:
6WOP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WOP entry

There are 2 chains in PDB entry 6WOP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3LYS 419
B
 GLN 4ALA 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6WOP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 16Right-handed alpha
Helix 2
AA2
A
48 53Right-handed alpha
Helix 3
AA3
A
60 72Right-handed alpha
Helix 4
AA4
A
84 98Right-handed alpha
Helix 5
AA5
A
111 128Right-handed alpha
Helix 6
AA6
A
143 150Right-handed alpha
Helix 7
AA7
A
174 178Right-handed 310
Helix 8
AA8
A
180 195Right-handed alpha
Helix 9
AA9
A
197 199Right-handed 310
Helix 10
AB1
A
219 234Right-handed alpha
Helix 11
AB2
A
253 258Right-handed 310
Helix 12
AB3
A
268 273Right-handed 310
Helix 13
AB4
A
284 288Right-handed alpha
Helix 14
AB5
A
302 319Right-handed alpha
Helix 15
AB6
A
320 343Right-handed alpha
Helix 16
AB7
A
363 377Right-handed alpha
Helix 17
AB8
A
400 417Right-handed alpha
Helix 18
AB9
B
5 16Right-handed alpha
Helix 19
AC1
B
48 53Right-handed alpha
Helix 20
AC2
B
60 71Right-handed alpha
Helix 21
AC3
B
84 98Right-handed alpha
Helix 22
AC4
B
111 128Right-handed alpha
Helix 23
AC5
B
143 150Right-handed alpha
Helix 24
AC6
B
174 178Right-handed 310
Helix 25
AC7
B
180 195Right-handed alpha
Helix 26
AC8
B
197 199Right-handed 310
Helix 27
AC9
B
219 234Right-handed alpha
Helix 28
AD1
B
253 258Right-handed 310
Helix 29
AD2
B
268 273Right-handed 310
Helix 30
AD3
B
284 288Right-handed alpha
Helix 31
AD4
B
302 319Right-handed alpha
Helix 32
AD5
B
320 343Right-handed alpha
Helix 33
AD6
B
363 377Right-handed alpha
Helix 34
AD7
B
400 420Right-handed alpha
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There are 8 sheets in PDB entry 6WOP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 32first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
43 46anti-parallel
Strand 4
A
379 380parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 109first strand
Strand 2
A
278 283anti-parallel
Strand 3
A
264 267anti-parallel
Strand 4
A
236 240parallel
Strand 5
A
201 206parallel
Strand 6
A
131 135parallel
Strand 7
A
167 170parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
216 217anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 353first strand
Strand 2
A
356 361anti-parallel
Strand 3
A
390 393anti-parallel
Strand 4
A
382 384anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 32first strand
Strand 2
B
35 38anti-parallel
Strand 3
B
43 46anti-parallel
Strand 4
B
379 380parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 109first strand
Strand 2
B
278 283anti-parallel
Strand 3
B
264 267anti-parallel
Strand 4
B
236 240parallel
Strand 5
B
201 206parallel
Strand 6
B
131 135parallel
Strand 7
B
167 170parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
216 217anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 353first strand
Strand 2
B
356 361anti-parallel
Strand 3
B
390 393anti-parallel
Strand 4
B
382 384anti-parallel
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