Analysis of interatomic Contacts of Structural Units in PDB entry:
6WPC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WPC entry

There are 4 chains in PDB entry 6WPC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 53	ALA 640
B	GLY 53	ALA 640
C	GLY 53	ALA 640
D	GLY 53	ALA 640

There are 74 helices in PDB entry 6WPC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	70	Right-handed alpha
Helix 2	AA2	A	74	85	Right-handed alpha
Helix 3	AA3	A	91	106	Right-handed alpha
Helix 4	AA4	A	110	141	Right-handed alpha
Helix 5	AA5	A	144	166	Right-handed alpha
Helix 6	AA6	A	167	170	Right-handed 310
Helix 7	AA7	A	178	204	Right-handed alpha
Helix 8	AA8	A	206	240	Right-handed alpha
Helix 9	AA9	A	243	261	Right-handed alpha
Helix 10	AB1	A	261	267	Right-handed alpha
Helix 11	AB2	A	268	272	Right-handed 310
Helix 12	AB3	A	291	296	Right-handed alpha
Helix 13	AB4	A	304	311	Right-handed alpha
Helix 14	AB5	A	348	350	Right-handed 310
Helix 15	AB6	A	431	433	Right-handed 310
Helix 16	AB7	A	442	447	Right-handed alpha
Helix 17	AB8	A	498	500	Right-handed 310
Helix 18	AB9	A	590	594	Right-handed 310
Helix 19	AC1	B	55	70	Right-handed alpha
Helix 20	AC2	B	74	85	Right-handed alpha
Helix 21	AC3	B	91	106	Right-handed alpha
Helix 22	AC4	B	110	141	Right-handed alpha
Helix 23	AC5	B	144	166	Right-handed alpha
Helix 24	AC6	B	167	170	Right-handed 310
Helix 25	AC7	B	178	204	Right-handed alpha
Helix 26	AC8	B	206	240	Right-handed alpha
Helix 27	AC9	B	243	261	Right-handed alpha
Helix 28	AD1	B	261	266	Right-handed alpha
Helix 29	AD2	B	267	272	Right-handed 310
Helix 30	AD3	B	291	297	Right-handed alpha
Helix 31	AD4	B	304	311	Right-handed alpha
Helix 32	AD5	B	348	350	Right-handed 310
Helix 33	AD6	B	431	433	Right-handed 310
Helix 34	AD7	B	442	447	Right-handed alpha
Helix 35	AD8	B	498	500	Right-handed 310
Helix 36	AD9	B	590	594	Right-handed 310
Helix 37	AE1	B	618	622	Right-handed 310
Helix 38	AE2	C	55	70	Right-handed alpha
Helix 39	AE3	C	74	85	Right-handed alpha
Helix 40	AE4	C	91	106	Right-handed alpha
Helix 41	AE5	C	110	139	Right-handed alpha
Helix 42	AE6	C	144	166	Right-handed alpha
Helix 43	AE7	C	167	170	Right-handed 310
Helix 44	AE8	C	178	204	Right-handed alpha
Helix 45	AE9	C	206	239	Right-handed alpha
Helix 46	AF1	C	243	261	Right-handed alpha
Helix 47	AF2	C	261	266	Right-handed alpha
Helix 48	AF3	C	267	272	Right-handed 310
Helix 49	AF4	C	291	297	Right-handed alpha
Helix 50	AF5	C	304	311	Right-handed alpha
Helix 51	AF6	C	431	433	Right-handed 310
Helix 52	AF7	C	442	447	Right-handed alpha
Helix 53	AF8	C	498	500	Right-handed 310
Helix 54	AF9	C	565	569	Right-handed 310
Helix 55	AG1	C	590	594	Right-handed 310
Helix 56	AG2	C	621	625	Right-handed 310
Helix 57	AG3	D	55	70	Right-handed alpha
Helix 58	AG4	D	74	85	Right-handed alpha
Helix 59	AG5	D	91	106	Right-handed alpha
Helix 60	AG6	D	110	141	Right-handed alpha
Helix 61	AG7	D	144	166	Right-handed alpha
Helix 62	AG8	D	167	170	Right-handed 310
Helix 63	AG9	D	178	204	Right-handed alpha
Helix 64	AH1	D	206	239	Right-handed alpha
Helix 65	AH2	D	243	261	Right-handed alpha
Helix 66	AH3	D	261	267	Right-handed alpha
Helix 67	AH4	D	268	272	Right-handed 310
Helix 68	AH5	D	291	296	Right-handed alpha
Helix 69	AH6	D	304	310	Right-handed alpha
Helix 70	AH7	D	348	350	Right-handed 310
Helix 71	AH8	D	431	433	Right-handed 310
Helix 72	AH9	D	442	447	Right-handed alpha
Helix 73	AI1	D	498	500	Right-handed 310
Helix 74	AI2	D	590	594	Right-handed 310

There are 32 sheets in PDB entry 6WPC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	492	496	parallel
Strand 3	A	630	638	anti-parallel
Strand 4	A	520	523	anti-parallel
Strand 5	A	507	510	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	492	496	parallel
Strand 3	A	630	638	anti-parallel
Strand 4	A	545	552	anti-parallel
Strand 5	A	595	596	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	290	first strand
Strand 2	A	467	478	anti-parallel
Strand 3	A	400	411	parallel
Strand 4	A	379	389	anti-parallel
Strand 5	A	428	429	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	422	first strand
Strand 2	A	400	411	anti-parallel
Strand 3	A	467	478	parallel
Strand 4	A	449	459	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	355	first strand
Strand 2	A	334	346	anti-parallel
Strand 3	A	359	360	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	355	first strand
Strand 2	A	334	346	anti-parallel
Strand 3	A	319	331	anti-parallel
Strand 4	A	366	372	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	487	first strand
Strand 2	A	527	536	parallel
Strand 3	A	502	503	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	487	first strand
Strand 2	A	527	536	parallel
Strand 3	A	609	617	anti-parallel
Strand 4	A	556	561	anti-parallel
Strand 5	A	573	579	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	492	496	parallel
Strand 3	B	630	638	anti-parallel
Strand 4	B	520	523	anti-parallel
Strand 5	B	507	510	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	492	496	parallel
Strand 3	B	630	638	anti-parallel
Strand 4	B	545	552	anti-parallel
Strand 5	B	595	596	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	290	first strand
Strand 2	B	467	478	anti-parallel
Strand 3	B	400	411	parallel
Strand 4	B	379	389	anti-parallel
Strand 5	B	428	429	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	422	first strand
Strand 2	B	400	411	anti-parallel
Strand 3	B	467	478	parallel
Strand 4	B	449	459	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	355	first strand
Strand 2	B	334	346	anti-parallel
Strand 3	B	359	360	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	355	first strand
Strand 2	B	334	346	anti-parallel
Strand 3	B	319	331	anti-parallel
Strand 4	B	369	372	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	487	first strand
Strand 2	B	527	536	parallel
Strand 3	B	502	503	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	487	first strand
Strand 2	B	527	536	parallel
Strand 3	B	609	617	anti-parallel
Strand 4	B	556	561	anti-parallel
Strand 5	B	573	579	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	281	first strand
Strand 2	C	492	496	parallel
Strand 3	C	630	639	anti-parallel
Strand 4	C	520	523	anti-parallel
Strand 5	C	507	510	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	281	first strand
Strand 2	C	492	496	parallel
Strand 3	C	630	639	anti-parallel
Strand 4	C	544	552	anti-parallel
Strand 5	C	595	596	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	290	first strand
Strand 2	C	467	478	anti-parallel
Strand 3	C	400	411	parallel
Strand 4	C	379	389	anti-parallel
Strand 5	C	428	429	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	422	first strand
Strand 2	C	400	411	anti-parallel
Strand 3	C	467	478	parallel
Strand 4	C	449	459	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	334	346	anti-parallel
Strand 3	C	359	360	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	334	346	anti-parallel
Strand 3	C	319	331	anti-parallel
Strand 4	C	369	372	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	487	first strand
Strand 2	C	527	536	parallel
Strand 3	C	502	503	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	487	first strand
Strand 2	C	527	536	parallel
Strand 3	C	609	617	anti-parallel
Strand 4	C	556	561	anti-parallel
Strand 5	C	573	579	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	281	first strand
Strand 2	D	492	496	parallel
Strand 3	D	630	639	anti-parallel
Strand 4	D	520	523	anti-parallel
Strand 5	D	507	510	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	281	first strand
Strand 2	D	492	496	parallel
Strand 3	D	630	639	anti-parallel
Strand 4	D	544	552	anti-parallel
Strand 5	D	595	596	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	287	290	first strand
Strand 2	D	467	478	anti-parallel
Strand 3	D	400	411	parallel
Strand 4	D	379	389	anti-parallel
Strand 5	D	428	429	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	420	422	first strand
Strand 2	D	400	411	anti-parallel
Strand 3	D	467	478	parallel
Strand 4	D	449	459	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	355	first strand
Strand 2	D	334	346	anti-parallel
Strand 3	D	359	360	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	355	first strand
Strand 2	D	334	346	anti-parallel
Strand 3	D	319	331	anti-parallel
Strand 4	D	366	372	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	486	487	first strand
Strand 2	D	527	536	parallel
Strand 3	D	502	503	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	486	487	first strand
Strand 2	D	527	536	parallel
Strand 3	D	609	617	anti-parallel
Strand 4	D	556	561	anti-parallel
Strand 5	D	573	579	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WPC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WPC