Analysis of interatomic Contacts of Structural Units in PDB entry:
6WPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WPM entry

There is 1 chain in PDB entry 6WPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 10PRO 410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6WPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 21Right-handed 310
Helix 2
AA2
A
22 37Right-handed alpha
Helix 3
AA3
A
51 63Right-handed alpha
Helix 4
AA4
A
72 82Right-handed alpha
Helix 5
AA5
A
87 91Right-handed 310
Helix 6
AA6
A
96 100Right-handed 310
Helix 7
AA7
A
101 108Right-handed alpha
Helix 8
AA8
A
131 137Right-handed alpha
Helix 9
AA9
A
145 147Right-handed 310
Helix 10
AB1
A
148 161Right-handed alpha
Helix 11
AB2
A
175 184Right-handed alpha
Helix 12
AB3
A
199 215Right-handed alpha
Helix 13
AB4
A
219 224Right-handed 310
Helix 14
AB5
A
227 236Right-handed alpha
Helix 15
AB6
A
245 253Right-handed alpha
Helix 16
AB7
A
258 262Right-handed alpha
Helix 17
AB8
A
291 303Right-handed alpha
Helix 18
AB9
A
304 315Right-handed alpha
Helix 19
AC1
A
321 334Right-handed alpha
Helix 20
AC2
A
339 356Right-handed alpha
Helix 21
AC3
A
357 359Right-handed 310
Helix 22
AC4
A
368 385Right-handed alpha
Helix 23
AC5
A
389 409Right-handed alpha
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There are 3 sheets in PDB entry 6WPM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 47first strand
Strand 2
A
11 16parallel
Strand 3
A
68 71parallel
Strand 4
A
279 284anti-parallel
Strand 5
A
117 123anti-parallel
Strand 6
A
318 319anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
114 115anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 244first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
263 266anti-parallel
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