Analysis of interatomic Contacts of Structural Units in PDB entry:
6WPN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WPN entry

There are 2 chains in PDB entry 6WPN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 10PRO 410
B
 THR 10PRO 410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 6WPN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 18Right-handed 310
Helix 2
AA2
A
20 21Right-handed 310
Helix 3
AA3
A
22 37Right-handed alpha
Helix 4
AA4
A
38 40Right-handed 310
Helix 5
AA5
A
52 62Right-handed alpha
Helix 6
AA6
A
72 81Right-handed alpha
Helix 7
AA7
A
87 91Right-handed 310
Helix 8
AA8
A
96 100Right-handed 310
Helix 9
AA9
A
101 106Right-handed alpha
Helix 10
AB1
A
131 137Right-handed alpha
Helix 11
AB2
A
145 147Right-handed 310
Helix 12
AB3
A
148 161Right-handed alpha
Helix 13
AB4
A
175 184Right-handed alpha
Helix 14
AB5
A
199 215Right-handed alpha
Helix 15
AB6
A
219 224Right-handed 310
Helix 16
AB7
A
226 236Right-handed alpha
Helix 17
AB8
A
245 256Right-handed alpha
Helix 18
AB9
A
256 262Right-handed alpha
Helix 19
AC1
A
291 303Right-handed alpha
Helix 20
AC2
A
304 316Right-handed alpha
Helix 21
AC3
A
321 334Right-handed alpha
Helix 22
AC4
A
339 356Right-handed alpha
Helix 23
AC5
A
368 385Right-handed alpha
Helix 24
AC6
A
389 409Right-handed alpha
Helix 25
AC7
B
22 37Right-handed alpha
Helix 26
AC8
B
52 62Right-handed alpha
Helix 27
AC9
B
72 81Right-handed alpha
Helix 28
AD1
B
87 91Right-handed 310
Helix 29
AD2
B
96 100Right-handed 310
Helix 30
AD3
B
101 107Right-handed alpha
Helix 31
AD4
B
131 137Right-handed alpha
Helix 32
AD5
B
145 147Right-handed 310
Helix 33
AD6
B
148 161Right-handed alpha
Helix 34
AD7
B
175 184Right-handed alpha
Helix 35
AD8
B
199 215Right-handed alpha
Helix 36
AD9
B
219 224Right-handed 310
Helix 37
AE1
B
226 236Right-handed alpha
Helix 38
AE2
B
248 256Right-handed alpha
Helix 39
AE3
B
256 262Right-handed alpha
Helix 40
AE4
B
291 303Right-handed alpha
Helix 41
AE5
B
304 316Right-handed alpha
Helix 42
AE6
B
321 334Right-handed alpha
Helix 43
AE7
B
339 359Right-handed alpha
Helix 44
AE8
B
368 385Right-handed alpha
Helix 45
AE9
B
389 409Right-handed alpha
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There are 7 sheets in PDB entry 6WPN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 47first strand
Strand 2
A
11 16parallel
Strand 3
A
68 71parallel
Strand 4
A
279 284anti-parallel
Strand 5
A
118 123anti-parallel
Strand 6
A
318 319anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 244first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
263 266anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 277first strand
Strand 2
A
359 360parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 47first strand
Strand 2
B
11 16parallel
Strand 3
B
68 71parallel
Strand 4
B
276 284anti-parallel
Strand 5
B
118 124anti-parallel
Strand 6
B
318 319anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 47first strand
Strand 2
B
11 16parallel
Strand 3
B
68 71parallel
Strand 4
B
276 284anti-parallel
Strand 5
B
361 362parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 110first strand
Strand 2
B
114 115anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 244first strand
Strand 2
B
126 130anti-parallel
Strand 3
B
263 266anti-parallel
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