Analysis of interatomic Contacts of Structural Units in PDB entry:
6WPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WPP entry

There are 2 chains in PDB entry 6WPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 344HIS 674
B
 GLY 343HIS 674
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6WPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
349 363Right-handed alpha
Helix 2
AA2
A
434 437Right-handed 310
Helix 3
AA3
A
438 443Right-handed alpha
Helix 4
AA4
A
476 485Right-handed alpha
Helix 5
AA5
A
488 509Right-handed alpha
Helix 6
AA6
A
517 519Right-handed 310
Helix 7
AA7
A
559 563Right-handed 310
Helix 8
AA8
A
564 569Right-handed alpha
Helix 9
AA9
A
575 592Right-handed alpha
Helix 10
AB1
A
604 611Right-handed alpha
Helix 11
AB2
A
614 618Right-handed 310
Helix 12
AB3
A
623 634Right-handed alpha
Helix 13
AB4
A
643 659Right-handed alpha
Helix 14
AB5
B
349 363Right-handed alpha
Helix 15
AB6
B
438 443Right-handed alpha
Helix 16
AB7
B
476 485Right-handed alpha
Helix 17
AB8
B
488 509Right-handed alpha
Helix 18
AB9
B
517 519Right-handed 310
Helix 19
AC1
B
564 569Right-handed alpha
Helix 20
AC2
B
575 592Right-handed alpha
Helix 21
AC3
B
604 611Right-handed alpha
Helix 22
AC4
B
614 618Right-handed 310
Helix 23
AC5
B
623 634Right-handed alpha
Helix 24
AC6
B
643 658Right-handed alpha
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There are 6 sheets in PDB entry 6WPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 347first strand
Strand 2
A
377 381parallel
Strand 3
A
455 461anti-parallel
Strand 4
A
464 469anti-parallel
Strand 5
A
425 432anti-parallel
Strand 6
A
413 419anti-parallel
Strand 7
A
399 408anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 512first strand
Strand 2
A
539 540anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 523first strand
Strand 2
A
530 532anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 347first strand
Strand 2
B
377 381parallel
Strand 3
B
455 461anti-parallel
Strand 4
B
464 469anti-parallel
Strand 5
B
425 432anti-parallel
Strand 6
B
413 419anti-parallel
Strand 7
B
399 408anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
511 512first strand
Strand 2
B
539 540anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
521 523first strand
Strand 2
B
530 532anti-parallel
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