Analysis of interatomic Contacts of Structural Units in PDB entry:
6WPU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WPU entry

There is 1 chain in PDB entry 6WPU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 17PHE 455
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6WPU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 43Right-handed alpha
Helix 2
AA2
A
57 61Right-handed 310
Helix 3
AA3
A
93 98Right-handed alpha
Helix 4
AA4
A
118 133Right-handed alpha
Helix 5
AA5
A
135 137Right-handed 310
Helix 6
AA6
A
192 196Right-handed 310
Helix 7
AA7
A
204 206Right-handed 310
Helix 8
AA8
A
209 213Right-handed 310
Helix 9
AA9
A
223 234Right-handed alpha
Helix 10
AB1
A
318 322Right-handed 310
Helix 11
AB2
A
324 328Right-handed 310
Helix 12
AB3
A
341 358Right-handed alpha
Helix 13
AB4
A
365 383Right-handed alpha
Helix 14
AB5
A
386 390Right-handed 310
Helix 15
AB6
A
396 409Right-handed alpha
Helix 16
AB7
A
414 431Right-handed alpha
Helix 17
AB8
A
441 453Right-handed alpha
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There are 6 sheets in PDB entry 6WPU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
46 51parallel
Strand 3
A
23 27parallel
Strand 4
A
174 177parallel
Strand 5
A
331 333parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 150first strand
Strand 2
A
156 162anti-parallel
Strand 3
A
167 172anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
295 296anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 202first strand
Strand 2
A
288 291parallel
Strand 3
A
216 220parallel
Strand 4
A
239 243parallel
Strand 5
A
261 264parallel
Strand 6
A
253 254anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 270first strand
Strand 2
A
275 278anti-parallel
Strand 3
A
283 285anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
314 316anti-parallel
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