Analysis of interatomic Contacts of Structural Units in PDB entry:
6WQN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WQN entry

There are 27 chains in PDB entry 6WQN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 4	ILE 115
B	ALA 2	LYS 275
C	PRO 2	LEU 117
D	MET 1	ILE 100
E	GLU 2	LYS 111
F	ARG 4	LEU 89
G	HIS 2	ILE 101
H	ALA 2	ILE 94
J	GLY 2	THR 60
K	LEU 9	GLU 61
L	THR 2	LYS 216
M	ALA 2	GLU 57
N	ALA 2	GLY 51
O	MET 1	GLU 47
P	VAL 2	ALA 45
Q	PRO 2	LYS 65
R	MET 1	GLY 37
S	SER 16	GLY 207
V	ARG 2	ARG 144
W	MET 1	VAL 121
X	LYS 2	VAL 145
Y	MET 1	GLU 136
Z	TYR 3	VAL 122
a	LYS 4	PHE 119
1	U 4	U 2920
2	C 2	G 112
I	SER 16	ALA 93

There are 70 helices in PDB entry 6WQN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	15	Right-handed 310
Helix 2	AA2	A	99	103	Right-handed 310
Helix 3	AA3	B	30	32	Right-handed 310
Helix 4	AA4	B	133	135	Right-handed 310
Helix 5	AA5	B	207	213	Right-handed alpha
Helix 6	AA6	B	221	225	Right-handed 310
Helix 7	AA7	B	264	268	Right-handed 310
Helix 8	AA8	C	9	20	Right-handed alpha
Helix 9	AA9	C	25	30	Right-handed 310
Helix 10	AB1	C	31	70	Right-handed alpha
Helix 11	AB2	C	71	73	Right-handed 310
Helix 12	AB3	C	75	86	Right-handed alpha
Helix 13	AB4	C	91	102	Right-handed alpha
Helix 14	AB5	C	102	116	Right-handed alpha
Helix 15	AB6	E	13	22	Right-handed alpha
Helix 16	AB7	E	30	39	Right-handed alpha
Helix 17	AB8	E	43	61	Right-handed alpha
Helix 18	AB9	E	65	69	Right-handed 310
Helix 19	AC1	E	89	91	Right-handed 310
Helix 20	AC2	F	34	47	Right-handed alpha
Helix 21	AC3	H	14	25	Right-handed alpha
Helix 22	AC4	H	45	56	Right-handed alpha
Helix 23	AC5	K	10	19	Right-handed alpha
Helix 24	AC6	K	22	35	Right-handed alpha
Helix 25	AC7	K	40	61	Right-handed alpha
Helix 26	AC8	L	70	79	Right-handed alpha
Helix 27	AC9	L	106	110	Right-handed 310
Helix 28	AD1	L	129	134	Right-handed alpha
Helix 29	AD2	M	16	27	Right-handed alpha
Helix 30	AD3	M	42	50	Right-handed alpha
Helix 31	AD4	N	9	17	Right-handed alpha
Helix 32	AD5	P	9	18	Right-handed alpha
Helix 33	AD6	P	18	23	Right-handed alpha
Helix 34	AD7	P	25	39	Right-handed alpha
Helix 35	AD8	Q	7	12	Right-handed alpha
Helix 36	AD9	Q	32	36	Right-handed 310
Helix 37	AE1	Q	37	43	Right-handed alpha
Helix 38	AE2	Q	44	46	Right-handed 310
Helix 39	AE3	Q	51	56	Right-handed alpha
Helix 40	AE4	Q	59	63	Right-handed 310
Helix 41	AE5	R	29	32	Right-handed 310
Helix 42	AE6	S	29	43	Right-handed alpha
Helix 43	AE7	S	102	119	Right-handed alpha
Helix 44	AE8	S	135	147	Right-handed alpha
Helix 45	AE9	S	160	169	Right-handed alpha
Helix 46	AF1	S	177	181	Right-handed 310
Helix 47	AF2	S	182	189	Right-handed alpha
Helix 48	AF3	S	196	206	Right-handed alpha
Helix 49	AF4	V	25	39	Right-handed alpha
Helix 50	AF5	V	59	63	Right-handed 310
Helix 51	AF6	V	68	73	Right-handed alpha
Helix 52	AF7	V	90	95	Right-handed alpha
Helix 53	AF8	V	97	108	Right-handed alpha
Helix 54	AF9	V	113	120	Right-handed alpha
Helix 55	AG1	V	133	137	Right-handed 310
Helix 56	AG2	W	104	109	Right-handed alpha
Helix 57	AG3	W	111	118	Right-handed alpha
Helix 58	AG4	X	56	61	Right-handed alpha
Helix 59	AG5	X	92	97	Right-handed alpha
Helix 60	AG6	X	131	137	Right-handed alpha
Helix 61	AG7	Y	44	59	Right-handed alpha
Helix 62	AG8	Y	112	118	Right-handed alpha
Helix 63	AG9	Y	118	123	Right-handed alpha
Helix 64	AH1	Z	9	28	Right-handed alpha
Helix 65	AH2	Z	34	52	Right-handed alpha
Helix 66	AH3	Z	55	63	Right-handed alpha
Helix 67	AH4	Z	80	85	Right-handed alpha
Helix 68	AH5	a	6	19	Right-handed alpha
Helix 69	AH6	a	69	87	Right-handed alpha
Helix 70	AH7	a	103	114	Right-handed alpha

There are 40 sheets in PDB entry 6WQN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	90	first strand
Strand 2	A	27	33	anti-parallel
Strand 3	A	42	53	anti-parallel
Strand 4	A	60	67	anti-parallel
Strand 5	A	70	77	anti-parallel
Strand 6	W	76	79	anti-parallel
Strand 7	W	69	70	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	17	19	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	36	first strand
Strand 2	B	61	63	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	105	first strand
Strand 2	B	91	96	anti-parallel
Strand 3	B	75	82	anti-parallel
Strand 4	B	114	116	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	131	first strand
Strand 2	B	189	192	anti-parallel
Strand 3	B	140	142	anti-parallel
Strand 4	B	162	168	anti-parallel
Strand 5	B	171	175	anti-parallel
Strand 6	B	181	185	anti-parallel
Strand 7	B	270	272	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	2	6	anti-parallel
Strand 3	D	38	42	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	22	first strand
Strand 2	D	91	99	anti-parallel
Strand 3	D	58	61	anti-parallel
Strand 4	D	32	35	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	22	first strand
Strand 2	D	91	99	anti-parallel
Strand 3	D	64	67	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	77	first strand
Strand 2	D	82	88	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	10	first strand
Strand 2	E	101	108	anti-parallel
Strand 3	E	70	78	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	87	first strand
Strand 2	E	93	98	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	10	first strand
Strand 2	F	24	29	anti-parallel
Strand 3	F	76	84	anti-parallel
Strand 4	F	49	57	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	64	first strand
Strand 2	G	32	35	anti-parallel
Strand 3	G	21	27	anti-parallel
Strand 4	G	8	11	anti-parallel
Strand 5	G	68	71	anti-parallel
Strand 6	G	78	79	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	40	43	first strand
Strand 2	G	57	60	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	81	83	first strand
Strand 2	G	92	94	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	8	first strand
Strand 2	H	39	44	anti-parallel
Strand 3	H	26	31	anti-parallel
Strand 4	H	85	92	parallel
Strand 5	H	73	80	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	65	first strand
Strand 2	H	68	70	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	13	16	first strand
Strand 2	J	26	29	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	33	38	first strand
Strand 2	J	45	50	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	177	183	first strand
Strand 2	L	116	121	anti-parallel
Strand 3	L	208	213	anti-parallel
Strand 4	L	4	16	anti-parallel
Strand 5	L	22	29	anti-parallel
Strand 6	L	194	198	anti-parallel
Strand 7	L	185	188	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	88	91	first strand
Strand 2	L	48	52	anti-parallel
Strand 3	L	33	39	anti-parallel
Strand 4	L	104	105	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	126	128	first strand
Strand 2	L	171	173	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	34	37	first strand
Strand 2	M	4	8	anti-parallel
Strand 3	M	54	57	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	27	29	first strand
Strand 2	N	36	38	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	17	22	first strand
Strand 2	O	2	9	anti-parallel
Strand 3	O	41	46	anti-parallel
Strand 4	O	33	36	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	14	16	first strand
Strand 2	Q	22	24	anti-parallel
Strand 3	Q	48	49	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	2	3	first strand
Strand 2	R	34	35	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	15	18	first strand
Strand 2	R	23	26	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	123	126	first strand
Strand 2	S	191	195	parallel
Strand 3	S	152	155	parallel
Strand 4	S	173	175	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	123	125	first strand
Strand 2	V	54	58	parallel
Strand 3	V	16	20	parallel
Strand 4	V	139	140	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	74	78	first strand
Strand 2	V	85	89	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	7	10	first strand
Strand 2	W	16	24	anti-parallel
Strand 3	W	38	46	anti-parallel
Strand 4	W	57	64	anti-parallel
Strand 5	W	83	86	anti-parallel
Strand 6	W	7	10	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	75	77	first strand
Strand 2	X	109	111	parallel
Strand 3	X	127	128	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	90	91	first strand
Strand 2	X	122	123	parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	63	66	first strand
Strand 2	Y	102	107	anti-parallel
Strand 3	Y	32	36	anti-parallel
Strand 4	Y	129	133	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	40	43	first strand
Strand 2	Y	89	97	anti-parallel
Strand 3	Y	72	76	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	29	33	first strand
Strand 2	Z	115	121	anti-parallel
Strand 3	Z	101	108	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	51	57	first strand
Strand 2	a	41	46	anti-parallel
Strand 3	a	30	32	anti-parallel
Strand 4	a	93	94	parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	30	31	first strand
Strand 2	I	44	47	anti-parallel
Strand 3	I	67	69	anti-parallel
Strand 4	I	59	61	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	38	39	first strand
Strand 2	I	73	79	anti-parallel
Strand 3	I	85	90	anti-parallel
Strand 4	I	54	55	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WQN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WQN