Analysis of interatomic Contacts of Structural Units in PDB entry:
6WQO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WQO entry

There are 6 chains in PDB entry 6WQO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 172	PHE 462
D	THR 171	GLY 463
E	GLN 6	PRO 224
F	ASP 6	GLY 217
B	GLN 6	PRO 224
C	ASP 6	GLU 218

There are 38 helices in PDB entry 6WQO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	196	212	Right-handed alpha
Helix 2	AA2	A	213	216	Right-handed 310
Helix 3	AA3	A	217	225	Right-handed alpha
Helix 4	AA4	A	225	240	Right-handed alpha
Helix 5	AA5	A	240	256	Right-handed alpha
Helix 6	AA6	A	256	261	Right-handed alpha
Helix 7	AA7	A	266	288	Right-handed alpha
Helix 8	AA8	A	289	307	Right-handed alpha
Helix 9	AA9	A	308	310	Right-handed 310
Helix 10	AB1	A	318	334	Right-handed alpha
Helix 11	AB2	A	336	362	Right-handed alpha
Helix 12	AB3	A	367	408	Right-handed alpha
Helix 13	AB4	A	415	460	Right-handed alpha
Helix 14	AB5	D	196	209	Right-handed alpha
Helix 15	AB6	D	210	216	Right-handed 310
Helix 16	AB7	D	218	223	Right-handed alpha
Helix 17	AB8	D	224	240	Right-handed alpha
Helix 18	AB9	D	240	255	Right-handed alpha
Helix 19	AC1	D	256	261	Right-handed alpha
Helix 20	AC2	D	266	288	Right-handed alpha
Helix 21	AC3	D	289	309	Right-handed alpha
Helix 22	AC4	D	318	333	Right-handed alpha
Helix 23	AC5	D	336	361	Right-handed alpha
Helix 24	AC6	D	367	408	Right-handed alpha
Helix 25	AC7	D	415	462	Right-handed alpha
Helix 26	AC8	E	91	95	Right-handed 310
Helix 27	AC9	E	196	200	Right-handed 310
Helix 28	AD1	F	84	88	Right-handed 310
Helix 29	AD2	F	126	132	Right-handed alpha
Helix 30	AD3	F	188	192	Right-handed alpha
Helix 31	AD4	B	68	70	Right-handed 310
Helix 32	AD5	B	91	95	Right-handed 310
Helix 33	AD6	B	167	169	Right-handed 310
Helix 34	AD7	B	198	201	Right-handed 310
Helix 35	AD8	B	212	215	Right-handed 310
Helix 36	AD9	C	84	88	Right-handed 310
Helix 37	AE1	C	126	131	Right-handed alpha
Helix 38	AE2	C	188	194	Right-handed alpha

There are 22 sheets in PDB entry 6WQO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	181	first strand
Strand 2	A	188	190	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	317	first strand
Strand 2	A	413	414	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	181	first strand
Strand 2	D	188	189	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	317	first strand
Strand 2	D	413	414	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	23	29	anti-parallel
Strand 3	E	82	87	anti-parallel
Strand 4	E	72	77	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	17	first strand
Strand 2	E	118	122	parallel
Strand 3	E	96	103	anti-parallel
Strand 4	E	38	44	anti-parallel
Strand 5	E	50	57	anti-parallel
Strand 6	E	62	64	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	135	first strand
Strand 2	E	147	156	anti-parallel
Strand 3	E	187	195	anti-parallel
Strand 4	E	174	176	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	135	first strand
Strand 2	E	147	156	anti-parallel
Strand 3	E	187	195	anti-parallel
Strand 4	E	180	181	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	165	first strand
Strand 2	E	207	211	anti-parallel
Strand 3	E	216	218	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	24	30	anti-parallel
Strand 3	F	75	80	anti-parallel
Strand 4	F	67	71	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	19	first strand
Strand 2	F	110	112	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	59	first strand
Strand 2	F	49	54	anti-parallel
Strand 3	F	38	43	anti-parallel
Strand 4	F	90	95	anti-parallel
Strand 5	F	107	108	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	123	first strand
Strand 2	F	134	144	anti-parallel
Strand 3	F	178	187	anti-parallel
Strand 4	F	164	168	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	155	first strand
Strand 2	F	196	202	anti-parallel
Strand 3	F	210	215	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	13	first strand
Strand 2	B	23	30	anti-parallel
Strand 3	B	82	87	anti-parallel
Strand 4	B	72	77	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	B	118	122	parallel
Strand 3	B	96	103	anti-parallel
Strand 4	B	38	44	anti-parallel
Strand 5	B	50	56	anti-parallel
Strand 6	B	63	64	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	135	first strand
Strand 2	B	146	156	anti-parallel
Strand 3	B	187	196	anti-parallel
Strand 4	B	174	176	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	165	first strand
Strand 2	B	206	211	anti-parallel
Strand 3	B	216	221	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	24	30	anti-parallel
Strand 3	C	75	80	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	18	first strand
Strand 2	C	107	111	parallel
Strand 3	C	90	95	anti-parallel
Strand 4	C	38	43	anti-parallel
Strand 5	C	50	54	anti-parallel
Strand 6	C	58	59	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	123	first strand
Strand 2	C	134	144	anti-parallel
Strand 3	C	178	187	anti-parallel
Strand 4	C	164	168	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	159	first strand
Strand 2	C	150	155	anti-parallel
Strand 3	C	196	202	anti-parallel
Strand 4	C	211	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WQO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WQO