Analysis of interatomic Contacts of Structural Units in PDB entry:
6WQS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WQS entry

There is 1 chain in PDB entry 6WQS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 547
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6WQS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 39Right-handed alpha
Helix 2
AA2
A
53 64Right-handed alpha
Helix 3
AA3
A
66 85Right-handed alpha
Helix 4
AA4
A
97 114Right-handed alpha
Helix 5
AA5
A
135 137Right-handed 310
Helix 6
AA6
A
164 168Right-handed 310
Helix 7
AA7
A
192 194Right-handed 310
Helix 8
AA8
A
195 205Right-handed alpha
Helix 9
AA9
A
209 222Right-handed alpha
Helix 10
AB1
A
252 254Right-handed 310
Helix 11
AB2
A
255 272Right-handed alpha
Helix 12
AB3
A
274 280Right-handed alpha
Helix 13
AB4
A
295 301Right-handed alpha
Helix 14
AB5
A
301 310Right-handed alpha
Helix 15
AB6
A
340 347Right-handed alpha
Helix 16
AB7
A
350 361Right-handed alpha
Helix 17
AB8
A
372 384Right-handed alpha
Helix 18
AB9
A
387 404Right-handed alpha
Helix 19
AC1
A
413 433Right-handed alpha
Helix 20
AC2
A
435 458Right-handed alpha
Helix 21
AC3
A
458 463Right-handed alpha
Helix 22
AC4
A
468 491Right-handed alpha
Helix 23
AC5
A
494 505Right-handed alpha
Helix 24
AC6
A
511 516Right-handed 310
Helix 25
AC7
A
535 547Right-handed alpha
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There are 5 sheets in PDB entry 6WQS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
43 49parallel
Strand 3
A
5 9parallel
Strand 4
A
286 292parallel
Strand 5
A
317 321parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
117 127anti-parallel
Strand 3
A
181 190anti-parallel
Strand 4
A
229 230anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
139 142anti-parallel
Strand 3
A
169 173anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 234first strand
Strand 2
A
248 250anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 326first strand
Strand 2
A
369 371parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il