Analysis of interatomic Contacts of Structural Units in PDB entry:
6WQU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WQU entry

There are 4 chains in PDB entry 6WQU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	A 1	T 15
B	T 16	A 30
C	SER 52	GLU 473
D	LYS 1668	LEU 1682

There are 6 helices in PDB entry 6WQU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	58	69	Right-handed alpha
Helix 2	AA2	C	104	116	Right-handed alpha
Helix 3	AA3	C	202	206	Right-handed 310
Helix 4	AA4	C	222	226	Right-handed 310
Helix 5	AA5	C	349	353	Right-handed 310
Helix 6	AA6	C	433	437	Right-handed 310

There are 11 sheets in PDB entry 6WQU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	368	first strand
Strand 2	C	72	79	anti-parallel
Strand 3	C	98	102	anti-parallel
Strand 4	C	148	150	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	368	first strand
Strand 2	C	460	470	anti-parallel
Strand 3	C	448	456	anti-parallel
Strand 4	C	408	412	anti-parallel
Strand 5	C	415	416	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	217	first strand
Strand 2	C	227	232	anti-parallel
Strand 3	C	235	239	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	294	first strand
Strand 2	C	297	299	anti-parallel
Strand 3	C	342	347	anti-parallel
Strand 4	C	337	339	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	217	first strand
Strand 2	C	246	251	anti-parallel
Strand 3	C	273	278	anti-parallel
Strand 4	C	288	294	anti-parallel
Strand 5	C	311	316	anti-parallel
Strand 6	C	354	368	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	368	first strand
Strand 2	C	211	217	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	83	first strand
Strand 2	C	187	190	parallel
Strand 3	C	164	165	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	141	first strand
Strand 2	C	125	131	anti-parallel
Strand 3	C	167	173	anti-parallel
Strand 4	C	178	183	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	284	first strand
Strand 2	D	1673	1674	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	327	first strand
Strand 2	C	330	335	anti-parallel
Strand 3	D	1679	1680	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	382	387	first strand
Strand 2	C	396	402	anti-parallel
Strand 3	C	426	430	anti-parallel
Strand 4	C	419	423	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WQU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WQU