Analysis of interatomic Contacts of Structural Units in PDB entry:
6WTH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WTH entry

There are 7 chains in PDB entry 6WTH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 114	SER 541
B	GLU 78	ALA 512
C	THR 80	ALA 521
D	UNK 3	UNK 107
E	UNK 3	UNK 122
F	UNK 1	UNK 116
G	UNK 1	UNK 110

There are 32 helices in PDB entry 6WTH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	143	162	Right-handed alpha
Helix 2	AA2	A	243	261	Right-handed alpha
Helix 3	AA3	A	361	366	Right-handed alpha
Helix 4	AA4	A	412	430	Right-handed alpha
Helix 5	AA5	A	453	466	Right-handed alpha
Helix 6	AA6	A	470	475	Right-handed alpha
Helix 7	AA7	A	498	510	Right-handed alpha
Helix 8	AA8	B	104	108	Right-handed 310
Helix 9	AA9	B	112	127	Right-handed alpha
Helix 10	AB1	B	141	146	Right-handed alpha
Helix 11	AB2	B	210	228	Right-handed alpha
Helix 12	AB3	B	231	237	Right-handed alpha
Helix 13	AB4	B	241	245	Right-handed alpha
Helix 14	AB5	B	257	261	Right-handed 310
Helix 15	AB6	B	290	293	Right-handed 310
Helix 16	AB7	B	302	306	Right-handed 310
Helix 17	AB8	B	374	378	Right-handed 310
Helix 18	AB9	B	382	399	Right-handed alpha
Helix 19	AC1	B	422	432	Right-handed alpha
Helix 20	AC2	B	433	444	Right-handed alpha
Helix 21	AC3	B	467	481	Right-handed alpha
Helix 22	AC4	C	114	129	Right-handed alpha
Helix 23	AC5	C	221	238	Right-handed alpha
Helix 24	AC6	C	239	241	Right-handed 310
Helix 25	AC7	C	242	250	Right-handed alpha
Helix 26	AC8	C	252	256	Right-handed alpha
Helix 27	AC9	C	268	272	Right-handed 310
Helix 28	AD1	C	313	317	Right-handed 310
Helix 29	AD2	C	339	344	Right-handed alpha
Helix 30	AD3	C	390	407	Right-handed alpha
Helix 31	AD4	C	431	444	Right-handed alpha
Helix 32	AD5	C	476	488	Right-handed alpha

There are 26 sheets in PDB entry 6WTH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	121	first strand
Strand 2	A	533	539	anti-parallel
Strand 3	A	373	385	parallel
Strand 4	A	522	528	parallel
Strand 5	A	328	332	anti-parallel
Strand 6	A	279	284	anti-parallel
Strand 7	A	287	288	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	121	first strand
Strand 2	A	533	539	anti-parallel
Strand 3	A	373	385	parallel
Strand 4	A	480	492	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	318	319	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	298	first strand
Strand 2	A	304	308	anti-parallel
Strand 3	A	129	134	anti-parallel
Strand 4	A	349	354	anti-parallel
Strand 5	A	367	369	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	224	228	anti-parallel
Strand 3	A	237	241	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	86	first strand
Strand 2	B	492	511	anti-parallel
Strand 3	B	341	352	parallel
Strand 4	B	449	453	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	255	first strand
Strand 2	B	246	251	anti-parallel
Strand 3	B	295	300	anti-parallel
Strand 4	B	492	511	anti-parallel
Strand 5	B	341	352	parallel
Strand 6	B	456	458	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	285	286	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	266	first strand
Strand 2	B	270	274	anti-parallel
Strand 3	B	94	99	anti-parallel
Strand 4	B	316	321	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	165	first strand
Strand 2	B	150	154	anti-parallel
Strand 3	B	189	196	anti-parallel
Strand 4	B	203	208	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	362	first strand
Strand 2	B	446	447	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	89	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	359	363	parallel
Strand 4	C	459	462	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	93	first strand
Strand 2	C	296	297	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	277	first strand
Strand 2	C	281	285	anti-parallel
Strand 3	C	96	101	anti-parallel
Strand 4	C	331	332	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	277	first strand
Strand 2	C	281	285	anti-parallel
Strand 3	C	96	101	anti-parallel
Strand 4	C	326	329	anti-parallel
Strand 5	C	345	348	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	163	first strand
Strand 2	C	201	207	anti-parallel
Strand 3	C	214	219	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	259	first strand
Strand 2	C	306	311	anti-parallel
Strand 3	C	501	508	anti-parallel
Strand 4	C	352	357	parallel
Strand 5	C	465	469	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	D	20	25	anti-parallel
Strand 3	D	71	76	anti-parallel
Strand 4	D	63	65	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	49	first strand
Strand 2	D	34	39	anti-parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	103	104	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	23	first strand
Strand 2	E	78	84	anti-parallel
Strand 3	E	68	72	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	45	51	anti-parallel
Strand 3	E	34	39	anti-parallel
Strand 4	E	93	99	anti-parallel
Strand 5	E	109	112	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	39	first strand
Strand 2	F	92	95	anti-parallel
Strand 3	F	112	114	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	51	first strand
Strand 2	F	58	60	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	6	first strand
Strand 2	G	22	25	anti-parallel
Strand 3	G	76	77	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	42	first strand
Strand 2	G	50	51	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WTH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WTH