Analysis of interatomic Contacts of Structural Units in PDB entry:
6WTS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WTS entry

There are 3 chains in PDB entry 6WTS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 19	ASP 567
B	GLY 19	GLY 566
C	ARG 1400	ILE 1637

There are 26 helices in PDB entry 6WTS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	36	Right-handed alpha
Helix 2	AA2	A	100	109	Right-handed alpha
Helix 3	AA3	A	113	117	Right-handed 310
Helix 4	AA4	A	332	339	Right-handed alpha
Helix 5	AA5	A	357	361	Right-handed 310
Helix 6	AA6	A	380	384	Right-handed 310
Helix 7	AA7	A	385	395	Right-handed alpha
Helix 8	AA8	A	405	408	Right-handed 310
Helix 9	AA9	A	473	478	Right-handed alpha
Helix 10	AB1	A	514	519	Right-handed alpha
Helix 11	AB2	A	521	528	Right-handed alpha
Helix 12	AB3	B	100	111	Right-handed alpha
Helix 13	AB4	B	332	339	Right-handed alpha
Helix 14	AB5	B	357	361	Right-handed 310
Helix 15	AB6	B	385	395	Right-handed alpha
Helix 16	AB7	B	405	408	Right-handed 310
Helix 17	AB8	B	473	478	Right-handed alpha
Helix 18	AB9	B	514	519	Right-handed alpha
Helix 19	AC1	B	522	529	Right-handed alpha
Helix 20	AC2	C	1434	1438	Right-handed 310
Helix 21	AC3	C	1439	1450	Right-handed alpha
Helix 22	AC4	C	1499	1502	Right-handed 310
Helix 23	AC5	C	1560	1565	Right-handed alpha
Helix 24	AC6	C	1565	1570	Right-handed alpha
Helix 25	AC7	C	1583	1589	Right-handed alpha
Helix 26	AC8	C	1590	1594	Right-handed alpha

There are 27 sheets in PDB entry 6WTS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	467	470	parallel
Strand 3	A	446	451	anti-parallel
Strand 4	A	437	442	anti-parallel
Strand 5	A	420	426	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	64	first strand
Strand 2	A	67	72	anti-parallel
Strand 3	A	75	80	anti-parallel
Strand 4	A	93	96	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	126	first strand
Strand 2	A	131	136	anti-parallel
Strand 3	A	143	148	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	178	first strand
Strand 2	A	181	187	anti-parallel
Strand 3	A	195	200	anti-parallel
Strand 4	A	207	208	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	228	first strand
Strand 2	A	231	239	anti-parallel
Strand 3	A	250	258	anti-parallel
Strand 4	A	277	282	anti-parallel
Strand 5	A	402	403	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	291	292	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	299	first strand
Strand 2	A	308	316	anti-parallel
Strand 3	A	303	305	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	299	first strand
Strand 2	A	308	316	anti-parallel
Strand 3	A	325	331	anti-parallel
Strand 4	A	411	413	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	345	first strand
Strand 2	A	354	355	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	493	first strand
Strand 2	A	498	502	anti-parallel
Strand 3	A	507	511	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	542	first strand
Strand 2	A	535	536	anti-parallel
Strand 3	A	553	554	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	30	first strand
Strand 2	B	464	470	parallel
Strand 3	B	446	451	anti-parallel
Strand 4	B	435	442	anti-parallel
Strand 5	B	420	429	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	B	507	511	anti-parallel
Strand 3	B	498	503	anti-parallel
Strand 4	B	487	493	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	64	first strand
Strand 2	B	67	72	anti-parallel
Strand 3	B	75	79	anti-parallel
Strand 4	B	94	96	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	128	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	143	148	anti-parallel
Strand 4	B	159	160	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	177	first strand
Strand 2	B	182	187	anti-parallel
Strand 3	B	195	200	anti-parallel
Strand 4	B	207	208	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	228	first strand
Strand 2	B	231	239	anti-parallel
Strand 3	B	250	258	anti-parallel
Strand 4	B	277	282	anti-parallel
Strand 5	B	402	403	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	B	291	292	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	299	first strand
Strand 2	B	308	316	anti-parallel
Strand 3	B	303	305	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	299	first strand
Strand 2	B	308	316	anti-parallel
Strand 3	B	325	331	anti-parallel
Strand 4	B	411	413	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	346	first strand
Strand 2	B	353	355	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	533	535	first strand
Strand 2	B	542	544	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1401	1402	first strand
Strand 2	C	1412	1419	anti-parallel
Strand 3	C	1405	1406	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1401	1402	first strand
Strand 2	C	1412	1419	anti-parallel
Strand 3	C	1426	1431	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1459	1466	first strand
Strand 2	C	1469	1476	anti-parallel
Strand 3	C	1481	1487	anti-parallel
Strand 4	C	1492	1498	anti-parallel
Strand 5	C	1503	1510	anti-parallel
Strand 6	C	1595	1597	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1514	1518	first strand
Strand 2	C	1527	1531	anti-parallel
Strand 3	C	1538	1546	anti-parallel
Strand 4	C	1549	1557	anti-parallel
Strand 5	C	1604	1606	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1613	1614	first strand
Strand 2	C	1623	1626	anti-parallel
Strand 3	C	1632	1636	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WTS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WTS