Analysis of interatomic Contacts of Structural Units in PDB entry:
6WU9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WU9 entry

There are 27 chains in PDB entry 6WU9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	U 4	C 2911
B	U 1	C 116
D	THR 2	ALA 208
E	PRO 2	ALA 207
F	ASN 2	GLN 178
G	SER 2	GLY 177
K	MET 1	ASN 145
L	MET 1	LEU 122
M	MET 1	ILE 146
N	MET 1	SER 141
O	TYR 3	VAL 126
P	ILE 2	PHE 118
Q	ASN 2	ARG 115
R	ALA 2	LYS 119
S	MET 1	ALA 102
T	GLN 4	LYS 115
U	GLU 2	GLN 90
V	MET 1	LEU 101
X	SER 18	VAL 93
Y	ALA 2	LYS 55
Z	LYS 2	ASN 62
0	ALA 2	VAL 59
2	ALA 2	LYS 57
3	MET 1	LYS 49
4	MET 1	ALA 44
5	PRO 2	MET 65
6	MET 1	GLY 38

There are 73 helices in PDB entry 6WU9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	62	71	Right-handed alpha
Helix 2	AA2	D	98	102	Right-handed 310
Helix 3	AA3	D	121	127	Right-handed alpha
Helix 4	AA4	E	29	43	Right-handed alpha
Helix 5	AA5	E	102	119	Right-handed alpha
Helix 6	AA6	E	135	146	Right-handed alpha
Helix 7	AA7	E	160	168	Right-handed alpha
Helix 8	AA8	E	182	189	Right-handed alpha
Helix 9	AA9	E	196	207	Right-handed alpha
Helix 10	AB1	F	4	20	Right-handed alpha
Helix 11	AB2	F	49	61	Right-handed alpha
Helix 12	AB3	F	74	78	Right-handed 310
Helix 13	AB4	F	92	106	Right-handed alpha
Helix 14	AB5	F	107	111	Right-handed 310
Helix 15	AB6	F	162	172	Right-handed alpha
Helix 16	AB7	G	62	81	Right-handed alpha
Helix 17	AB8	G	137	149	Right-handed alpha
Helix 18	AB9	K	25	38	Right-handed alpha
Helix 19	AC1	K	60	63	Right-handed 310
Helix 20	AC2	K	68	73	Right-handed alpha
Helix 21	AC3	K	91	96	Right-handed alpha
Helix 22	AC4	K	97	108	Right-handed alpha
Helix 23	AC5	K	113	120	Right-handed alpha
Helix 24	AC6	K	133	137	Right-handed 310
Helix 25	AC7	L	104	109	Right-handed alpha
Helix 26	AC8	M	37	41	Right-handed 310
Helix 27	AC9	M	56	61	Right-handed alpha
Helix 28	AD1	M	80	84	Right-handed 310
Helix 29	AD2	M	92	97	Right-handed alpha
Helix 30	AD3	M	129	140	Right-handed alpha
Helix 31	AD4	N	44	57	Right-handed alpha
Helix 32	AD5	N	110	123	Right-handed alpha
Helix 33	AD6	O	9	26	Right-handed alpha
Helix 34	AD7	O	34	52	Right-handed alpha
Helix 35	AD8	O	55	63	Right-handed alpha
Helix 36	AD9	O	86	92	Right-handed alpha
Helix 37	AE1	O	92	97	Right-handed alpha
Helix 38	AE2	P	6	19	Right-handed alpha
Helix 39	AE3	P	69	86	Right-handed alpha
Helix 40	AE4	P	102	114	Right-handed alpha
Helix 41	AE5	Q	3	11	Right-handed alpha
Helix 42	AE6	Q	53	56	Right-handed 310
Helix 43	AE7	Q	97	103	Right-handed 310
Helix 44	AE8	R	8	20	Right-handed alpha
Helix 45	AE9	R	25	29	Right-handed 310
Helix 46	AF1	R	31	70	Right-handed alpha
Helix 47	AF2	R	71	73	Right-handed 310
Helix 48	AF3	R	75	86	Right-handed alpha
Helix 49	AF4	R	91	102	Right-handed alpha
Helix 50	AF5	R	102	117	Right-handed alpha
Helix 51	AF6	T	18	27	Right-handed alpha
Helix 52	AF7	T	33	43	Right-handed alpha
Helix 53	AF8	T	48	66	Right-handed alpha
Helix 54	AF9	T	94	96	Right-handed 310
Helix 55	AG1	U	13	20	Right-handed alpha
Helix 56	AG2	U	34	47	Right-handed alpha
Helix 57	AG3	Y	51	55	Right-handed alpha
Helix 58	AG4	Z	3	7	Right-handed alpha
Helix 59	AG5	Z	10	34	Right-handed alpha
Helix 60	AG6	Z	41	61	Right-handed alpha
Helix 61	AG7	0	16	27	Right-handed alpha
Helix 62	AG8	0	40	51	Right-handed alpha
Helix 63	AG9	2	9	17	Right-handed alpha
Helix 64	AH1	2	18	20	Right-handed 310
Helix 65	AH2	4	8	17	Right-handed alpha
Helix 66	AH3	4	17	23	Right-handed alpha
Helix 67	AH4	4	24	36	Right-handed alpha
Helix 68	AH5	5	7	12	Right-handed alpha
Helix 69	AH6	5	32	36	Right-handed 310
Helix 70	AH7	5	37	44	Right-handed alpha
Helix 71	AH8	5	51	59	Right-handed alpha
Helix 72	AH9	5	60	63	Right-handed 310
Helix 73	AI1	6	30	33	Right-handed 310

There are 40 sheets in PDB entry 6WU9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	16	first strand
Strand 2	D	22	29	anti-parallel
Strand 3	D	185	189	anti-parallel
Strand 4	D	168	180	anti-parallel
Strand 5	D	105	113	anti-parallel
Strand 6	D	199	204	anti-parallel
Strand 7	D	4	16	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	84	first strand
Strand 2	D	48	55	anti-parallel
Strand 3	D	33	39	anti-parallel
Strand 4	D	96	97	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	120	first strand
Strand 2	D	162	165	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	18	first strand
Strand 2	E	3	7	anti-parallel
Strand 3	E	123	126	parallel
Strand 4	E	191	195	parallel
Strand 5	E	152	156	parallel
Strand 6	E	173	177	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	91	first strand
Strand 2	F	31	38	anti-parallel
Strand 3	F	153	158	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	20	first strand
Strand 2	G	23	27	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	83	87	first strand
Strand 2	G	131	135	anti-parallel
Strand 3	G	122	123	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	99	first strand
Strand 2	G	102	106	anti-parallel
Strand 3	G	113	116	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	123	126	first strand
Strand 2	K	54	58	parallel
Strand 3	K	16	20	parallel
Strand 4	K	139	140	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	75	78	first strand
Strand 2	K	85	89	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	7	10	first strand
Strand 2	L	16	23	anti-parallel
Strand 3	L	38	46	anti-parallel
Strand 4	L	57	63	anti-parallel
Strand 5	L	83	86	anti-parallel
Strand 6	L	7	10	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	69	70	first strand
Strand 2	L	76	79	anti-parallel
Strand 3	Q	68	75	anti-parallel
Strand 4	Q	58	65	anti-parallel
Strand 5	Q	43	51	anti-parallel
Strand 6	Q	25	28	anti-parallel
Strand 7	Q	84	88	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	110	111	first strand
Strand 2	M	127	128	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	122	125	first strand
Strand 2	M	142	145	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	63	66	first strand
Strand 2	N	102	107	anti-parallel
Strand 3	N	32	36	anti-parallel
Strand 4	N	129	133	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	40	43	first strand
Strand 2	N	93	97	anti-parallel
Strand 3	N	72	73	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	29	33	first strand
Strand 2	O	119	124	anti-parallel
Strand 3	O	106	112	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	34	35	first strand
Strand 2	P	40	46	anti-parallel
Strand 3	P	51	57	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	34	35	first strand
Strand 2	P	40	46	anti-parallel
Strand 3	P	30	31	anti-parallel
Strand 4	P	92	93	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	32	34	first strand
Strand 2	Q	37	39	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	14	first strand
Strand 2	S	3	7	anti-parallel
Strand 3	S	38	41	anti-parallel
Strand 4	S	47	48	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	19	22	first strand
Strand 2	S	91	100	anti-parallel
Strand 3	S	58	67	anti-parallel
Strand 4	S	32	35	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	71	76	first strand
Strand 2	S	83	88	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	7	15	first strand
Strand 2	T	106	113	anti-parallel
Strand 3	T	75	83	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	87	92	first strand
Strand 2	T	98	103	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	7	10	first strand
Strand 2	U	24	29	anti-parallel
Strand 3	U	75	82	anti-parallel
Strand 4	U	50	58	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	62	64	first strand
Strand 2	U	69	71	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	63	64	first strand
Strand 2	V	32	35	anti-parallel
Strand 3	V	20	27	anti-parallel
Strand 4	V	8	11	anti-parallel
Strand 5	V	68	71	anti-parallel
Strand 6	V	78	79	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	40	42	first strand
Strand 2	V	58	60	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	81	83	first strand
Strand 2	V	92	94	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	31	32	first strand
Strand 2	X	45	48	anti-parallel
Strand 3	X	68	70	anti-parallel
Strand 4	X	60	62	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	39	40	first strand
Strand 2	X	74	81	anti-parallel
Strand 3	X	85	91	anti-parallel
Strand 4	X	54	56	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	13	18	first strand
Strand 2	Y	24	29	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	33	39	first strand
Strand 2	Y	44	50	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	34	38	first strand
Strand 2	3	8	anti-parallel
Strand 3	54	58	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	27	29	first strand
Strand 2	2	36	38	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	48	49	first strand
Strand 2	2	52	53	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	15	22	first strand
Strand 2	3	2	9	anti-parallel
Strand 3	3	41	47	anti-parallel
Strand 4	3	31	36	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	14	16	first strand
Strand 2	5	22	24	anti-parallel
Strand 3	5	48	49	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	2	4	first strand
Strand 2	6	35	37	parallel
Strand 3	6	23	26	anti-parallel
Strand 4	6	15	18	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WU9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WU9