Analysis of interatomic Contacts of Structural Units in PDB entry:
6WUH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WUH entry

There are 3 chains in PDB entry 6WUH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 14ARG 333
B
 SER 47LEU 512
C
 ALA 2ALA 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 6WUH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 42Right-handed 310
Helix 2
AA2
A
59 64Right-handed alpha
Helix 3
AA3
A
69 82Right-handed alpha
Helix 4
AA4
A
122 127Right-handed alpha
Helix 5
AA5
A
150 163Right-handed alpha
Helix 6
AA6
A
163 173Right-handed alpha
Helix 7
AA7
A
175 177Right-handed 310
Helix 8
AA8
A
178 186Right-handed alpha
Helix 9
AA9
A
193 213Right-handed alpha
Helix 10
AB1
A
237 255Right-handed alpha
Helix 11
AB2
A
269 285Right-handed alpha
Helix 12
AB3
A
300 308Right-handed alpha
Helix 13
AB4
A
311 321Right-handed alpha
Helix 14
AB5
B
58 66Right-handed alpha
Helix 15
AB6
B
81 94Right-handed alpha
Helix 16
AB7
B
255 260Right-handed alpha
Helix 17
AB8
B
369 374Right-handed alpha
Helix 18
AB9
B
446 462Right-handed alpha
Helix 19
AC1
C
18 32Right-handed alpha
Helix 20
AC2
C
43 47Right-handed 310
Helix 21
AC3
C
66 73Right-handed alpha
Helix 22
AC4
C
106 120Right-handed alpha
Helix 23
AC5
C
123 128Right-handed alpha
Helix 24
AC6
C
141 148Right-handed alpha
Helix 25
AC7
C
153 156Right-handed 310
Helix 26
AC8
C
157 170Right-handed alpha
Helix 27
AC9
C
239 251Right-handed alpha
Helix 28
AD1
C
270 284Right-handed alpha
Helix 29
AD2
C
291 300Right-handed alpha
Helix 30
AD3
C
300 315Right-handed alpha
Helix 31
AD4
C
316 320Right-handed 310
Helix 32
AD5
C
329 333Right-handed 310
Helix 33
AD6
C
338 352Right-handed alpha
Helix 34
AD7
C
356 377Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 6WUH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
B
492 494parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
51 54parallel
Strand 3
A
104 105anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 140first strand
Strand 2
B
157 158anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 182first strand
Strand 2
B
206 210anti-parallel
Strand 3
B
215 217anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 235first strand
Strand 2
B
273 277anti-parallel
Strand 3
B
290 297anti-parallel
Strand 4
B
310 316anti-parallel
Strand 5
B
336 344anti-parallel
Strand 6
B
395 402anti-parallel
Strand 7
B
426 428anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
416 417first strand
Strand 2
B
475 477anti-parallel
Strand 3
B
482 483anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 423first strand
Strand 2
B
469 473anti-parallel
Strand 3
B
486 489anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 7first strand
Strand 2
C
40 41parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 56first strand
Strand 2
C
63 65anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il