Analysis of interatomic Contacts of Structural Units in PDB entry:
6WUJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WUJ entry

There are 3 chains in PDB entry 6WUJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 24	ARG 333
B	ASN 156	LEU 512
C	ALA 2	SER 376

There are 33 helices in PDB entry 6WUJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	44	Right-handed alpha
Helix 2	AA2	A	58	63	Right-handed alpha
Helix 3	AA3	A	69	82	Right-handed alpha
Helix 4	AA4	A	119	121	Right-handed 310
Helix 5	AA5	A	122	127	Right-handed alpha
Helix 6	AA6	A	152	162	Right-handed alpha
Helix 7	AA7	A	162	173	Right-handed alpha
Helix 8	AA8	A	175	177	Right-handed 310
Helix 9	AA9	A	178	187	Right-handed alpha
Helix 10	AB1	A	193	215	Right-handed alpha
Helix 11	AB2	A	237	255	Right-handed alpha
Helix 12	AB3	A	271	280	Right-handed alpha
Helix 13	AB4	A	280	285	Right-handed alpha
Helix 14	AB5	A	302	306	Right-handed alpha
Helix 15	AB6	A	311	321	Right-handed alpha
Helix 16	AB7	B	369	374	Right-handed alpha
Helix 17	AB8	B	448	461	Right-handed alpha
Helix 18	AB9	C	18	32	Right-handed alpha
Helix 19	AC1	C	43	47	Right-handed 310
Helix 20	AC2	C	66	73	Right-handed alpha
Helix 21	AC3	C	106	120	Right-handed alpha
Helix 22	AC4	C	123	130	Right-handed alpha
Helix 23	AC5	C	141	148	Right-handed alpha
Helix 24	AC6	C	153	156	Right-handed 310
Helix 25	AC7	C	157	169	Right-handed alpha
Helix 26	AC8	C	239	255	Right-handed alpha
Helix 27	AC9	C	271	282	Right-handed alpha
Helix 28	AD1	C	292	300	Right-handed alpha
Helix 29	AD2	C	300	315	Right-handed alpha
Helix 30	AD3	C	316	320	Right-handed 310
Helix 31	AD4	C	329	333	Right-handed 310
Helix 32	AD5	C	340	352	Right-handed alpha
Helix 33	AD6	C	356	376	Right-handed alpha

There are 10 sheets in PDB entry 6WUJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	B	492	494	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	54	first strand
Strand 2	A	87	90	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	159	first strand
Strand 2	B	168	169	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	172	first strand
Strand 2	B	183	184	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	202	first strand
Strand 2	B	222	229	anti-parallel
Strand 3	B	235	242	anti-parallel
Strand 4	B	268	277	anti-parallel
Strand 5	B	290	297	anti-parallel
Strand 6	B	309	312	anti-parallel
Strand 7	B	338	346	anti-parallel
Strand 8	B	396	400	anti-parallel
Strand 9	B	426	427	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	202	first strand
Strand 2	B	222	229	anti-parallel
Strand 3	B	235	242	anti-parallel
Strand 4	B	268	277	anti-parallel
Strand 5	B	290	297	anti-parallel
Strand 6	B	314	316	anti-parallel
Strand 7	B	338	346	anti-parallel
Strand 8	B	396	400	anti-parallel
Strand 9	B	426	427	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	210	first strand
Strand 2	B	215	219	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	421	first strand
Strand 2	B	471	477	anti-parallel
Strand 3	B	487	488	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	421	first strand
Strand 2	B	471	477	anti-parallel
Strand 3	B	482	483	anti-parallel
Strand 4	B	507	508	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	54	57	anti-parallel
Strand 3	C	62	65	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WUJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WUJ