Analysis of interatomic Contacts of Structural Units in PDB entry:
6WUM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WUM entry

There are 6 chains in PDB entry 6WUM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	TYR 26	ARG 333
b	SER -32	VAL 424
a	SER 47	LEU 512
A	TYR 26	ARG 333
C	SER -32	VAL 424
B	SER 47	LEU 512

There are 74 helices in PDB entry 6WUM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	39	44	Right-handed alpha
Helix 2	AA2	E	57	62	Right-handed alpha
Helix 3	AA3	E	69	82	Right-handed alpha
Helix 4	AA4	E	122	127	Right-handed alpha
Helix 5	AA5	E	150	174	Right-handed alpha
Helix 6	AA6	E	175	177	Right-handed 310
Helix 7	AA7	E	178	187	Right-handed alpha
Helix 8	AA8	E	193	213	Right-handed alpha
Helix 9	AA9	E	235	255	Right-handed alpha
Helix 10	AB1	E	269	280	Right-handed alpha
Helix 11	AB2	E	280	285	Right-handed alpha
Helix 12	AB3	E	293	297	Right-handed alpha
Helix 13	AB4	E	300	307	Right-handed alpha
Helix 14	AB5	E	311	321	Right-handed alpha
Helix 15	AB6	b	18	32	Right-handed alpha
Helix 16	AB7	b	43	47	Right-handed 310
Helix 17	AB8	b	66	73	Right-handed alpha
Helix 18	AB9	b	106	121	Right-handed alpha
Helix 19	AC1	b	125	130	Right-handed alpha
Helix 20	AC2	b	142	148	Right-handed alpha
Helix 21	AC3	b	153	156	Right-handed 310
Helix 22	AC4	b	157	171	Right-handed alpha
Helix 23	AC5	b	239	254	Right-handed alpha
Helix 24	AC6	b	255	257	Right-handed 310
Helix 25	AC7	b	268	284	Right-handed alpha
Helix 26	AC8	b	291	299	Right-handed alpha
Helix 27	AC9	b	300	315	Right-handed alpha
Helix 28	AD1	b	316	319	Right-handed 310
Helix 29	AD2	b	328	333	Right-handed alpha
Helix 30	AD3	b	338	352	Right-handed alpha
Helix 31	AD4	b	356	378	Right-handed alpha
Helix 32	AD5	b	386	407	Right-handed alpha
Helix 33	AD6	a	58	70	Right-handed alpha
Helix 34	AD7	a	86	96	Right-handed alpha
Helix 35	AD8	a	211	214	Right-handed 310
Helix 36	AD9	a	257	261	Right-handed 310
Helix 37	AE1	a	447	462	Right-handed alpha
Helix 38	AE2	A	39	44	Right-handed alpha
Helix 39	AE3	A	57	62	Right-handed alpha
Helix 40	AE4	A	69	82	Right-handed alpha
Helix 41	AE5	A	122	127	Right-handed alpha
Helix 42	AE6	A	150	174	Right-handed alpha
Helix 43	AE7	A	175	177	Right-handed 310
Helix 44	AE8	A	178	187	Right-handed alpha
Helix 45	AE9	A	193	213	Right-handed alpha
Helix 46	AF1	A	235	255	Right-handed alpha
Helix 47	AF2	A	269	280	Right-handed alpha
Helix 48	AF3	A	280	285	Right-handed alpha
Helix 49	AF4	A	293	297	Right-handed alpha
Helix 50	AF5	A	300	307	Right-handed alpha
Helix 51	AF6	A	311	321	Right-handed alpha
Helix 52	AF7	C	18	32	Right-handed alpha
Helix 53	AF8	C	43	47	Right-handed 310
Helix 54	AF9	C	66	73	Right-handed alpha
Helix 55	AG1	C	106	121	Right-handed alpha
Helix 56	AG2	C	125	130	Right-handed alpha
Helix 57	AG3	C	142	148	Right-handed alpha
Helix 58	AG4	C	153	156	Right-handed 310
Helix 59	AG5	C	157	171	Right-handed alpha
Helix 60	AG6	C	239	254	Right-handed alpha
Helix 61	AG7	C	255	257	Right-handed 310
Helix 62	AG8	C	268	284	Right-handed alpha
Helix 63	AG9	C	291	299	Right-handed alpha
Helix 64	AH1	C	300	315	Right-handed alpha
Helix 65	AH2	C	316	319	Right-handed 310
Helix 66	AH3	C	328	333	Right-handed alpha
Helix 67	AH4	C	338	352	Right-handed alpha
Helix 68	AH5	C	356	378	Right-handed alpha
Helix 69	AH6	C	386	407	Right-handed alpha
Helix 70	AH7	B	58	70	Right-handed alpha
Helix 71	AH8	B	86	96	Right-handed alpha
Helix 72	AH9	B	211	214	Right-handed 310
Helix 73	AI1	B	257	261	Right-handed 310
Helix 74	AI2	B	447	462	Right-handed alpha

There are 26 sheets in PDB entry 6WUM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	31	first strand
Strand 2	a	492	493	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	89	first strand
Strand 2	E	51	53	parallel
Strand 3	E	104	105	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	55	56	first strand
Strand 2	b	63	64	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	419	421	first strand
Strand 2	a	48	52	anti-parallel
Strand 3	a	128	131	parallel
Strand 4	a	107	109	anti-parallel

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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	139	142	first strand
Strand 2	a	155	159	anti-parallel
Strand 3	a	167	170	anti-parallel
Strand 4	a	183	190	anti-parallel
Strand 5	a	198	210	anti-parallel
Strand 6	a	222	227	anti-parallel
Strand 7	a	239	242	anti-parallel
Strand 8	a	268	272	anti-parallel
Strand 9	a	290	297	anti-parallel
Strand 10	a	274	277	anti-parallel
Strand 11	a	235	236	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	198	210	first strand
Strand 2	a	215	219	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	290	297	first strand
Strand 2	a	311	316	anti-parallel
Strand 3	a	343	344	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	311	316	first strand
Strand 2	a	339	340	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	319	320	first strand
Strand 2	a	335	336	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	356	357	first strand
Strand 2	a	445	446	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	396	397	first strand
Strand 2	a	426	427	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	400	401	first strand
Strand 2	a	422	423	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	405	406	first strand
Strand 2	a	416	420	anti-parallel
Strand 3	a	472	477	anti-parallel
Strand 4	a	482	483	anti-parallel
Strand 5	a	507	508	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	31	first strand
Strand 2	B	492	493	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	51	53	parallel
Strand 3	A	104	105	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	63	64	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	417	421	first strand
Strand 2	B	48	52	anti-parallel
Strand 3	B	128	131	parallel
Strand 4	B	107	109	anti-parallel

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There are 11 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	142	first strand
Strand 2	B	155	159	anti-parallel
Strand 3	B	167	170	anti-parallel
Strand 4	B	183	190	anti-parallel
Strand 5	B	198	210	anti-parallel
Strand 6	B	222	227	anti-parallel
Strand 7	B	239	242	anti-parallel
Strand 8	B	268	272	anti-parallel
Strand 9	B	290	297	anti-parallel
Strand 10	B	274	277	anti-parallel
Strand 11	B	235	236	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	210	first strand
Strand 2	B	215	219	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	297	first strand
Strand 2	B	311	316	anti-parallel
Strand 3	B	343	344	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	316	first strand
Strand 2	B	339	340	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	320	first strand
Strand 2	B	335	336	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	357	first strand
Strand 2	B	445	446	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	397	first strand
Strand 2	B	426	427	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	401	first strand
Strand 2	B	422	423	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	406	first strand
Strand 2	B	416	420	anti-parallel
Strand 3	B	472	477	anti-parallel
Strand 4	B	482	483	anti-parallel
Strand 5	B	507	508	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WUM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WUM