Analysis of interatomic Contacts of Structural Units in PDB entry:
6WUQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WUQ entry

There are 2 chains in PDB entry 6WUQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4ALA 432
B
 SER 4PHE 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6WUQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 33Right-handed alpha
Helix 2
AA2
A
35 42Right-handed alpha
Helix 3
AA3
A
52 57Right-handed 310
Helix 4
AA4
A
61 68Right-handed alpha
Helix 5
AA5
A
77 79Right-handed 310
Helix 6
AA6
A
101 112Right-handed alpha
Helix 7
AA7
A
134 146Right-handed alpha
Helix 8
AA8
A
161 172Right-handed alpha
Helix 9
AA9
A
180 194Right-handed alpha
Helix 10
AB1
A
216 227Right-handed alpha
Helix 11
AB2
A
335 345Right-handed alpha
Helix 12
AB3
A
346 351Right-handed 310
Helix 13
AB4
A
374 390Right-handed alpha
Helix 14
AB5
A
406 412Right-handed alpha
Helix 15
AB6
B
13 33Right-handed alpha
Helix 16
AB7
B
35 42Right-handed alpha
Helix 17
AB8
B
52 57Right-handed 310
Helix 18
AB9
B
61 68Right-handed alpha
Helix 19
AC1
B
77 81Right-handed 310
Helix 20
AC2
B
100 112Right-handed alpha
Helix 21
AC3
B
134 146Right-handed alpha
Helix 22
AC4
B
161 172Right-handed alpha
Helix 23
AC5
B
180 194Right-handed alpha
Helix 24
AC6
B
216 227Right-handed alpha
Helix 25
AC7
B
336 344Right-handed alpha
Helix 26
AC8
B
345 346Right-handed 310
Helix 27
AC9
B
347 351Right-handed 310
Helix 28
AD1
B
371 390Right-handed alpha
Helix 29
AD2
B
406 412Right-handed alpha
Helix 30
AD3
B
428 433Right-handed 310
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There are 8 sheets in PDB entry 6WUQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 87first strand
Strand 2
A
95 100anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
123 126parallel
Strand 3
A
176 178parallel
Strand 4
A
207 211parallel
Strand 5
A
232 238parallel
Strand 6
A
242 247anti-parallel
Strand 7
A
253 255anti-parallel
Strand 8
A
316 321anti-parallel
Strand 9
A
295 304anti-parallel
Strand 10
A
276 284anti-parallel
Strand 11
A
260 265anti-parallel
Strand 12
A
272 273anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 329first strand
Strand 2
A
332 334anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 399first strand
Strand 2
A
364 369parallel
Strand 3
A
355 359anti-parallel
Strand 4
B
422 424parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 424first strand
Strand 2
B
354 359parallel
Strand 3
B
364 369anti-parallel
Strand 4
B
394 399parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 87first strand
Strand 2
B
95 99anti-parallel
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There are 12 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 152first strand
Strand 2
B
123 126parallel
Strand 3
B
176 178parallel
Strand 4
B
207 211parallel
Strand 5
B
232 238parallel
Strand 6
B
242 247anti-parallel
Strand 7
B
253 255anti-parallel
Strand 8
B
316 322anti-parallel
Strand 9
B
295 304anti-parallel
Strand 10
B
276 284anti-parallel
Strand 11
B
260 265anti-parallel
Strand 12
B
272 273anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 329first strand
Strand 2
B
332 335anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il