Analysis of interatomic Contacts of Structural Units in PDB entry:
6WVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WVD entry

There are 2 chains in PDB entry 6WVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 64
A
 VAL 68HIS 413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6WVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed 310
Helix 2
AA2
A
56 61Right-handed 310
Helix 3
AA3
A
68 72Right-handed 310
Helix 4
AA4
A
75 81Right-handed 310
Helix 5
AA5
A
82 87Right-handed alpha
Helix 6
AA6
A
163 204Right-handed alpha
Helix 7
AA7
A
218 223Right-handed alpha
Helix 8
AA8
A
225 236Right-handed alpha
Helix 9
AA9
A
240 255Right-handed alpha
Helix 10
AB1
A
256 266Right-handed alpha
Helix 11
AB2
A
266 277Right-handed alpha
Helix 12
AB3
A
288 328Right-handed alpha
Helix 13
AB4
A
338 341Right-handed 310
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There are 2 sheets in PDB entry 6WVD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 22first strand
Strand 2
A
25 36anti-parallel
Strand 3
A
41 48anti-parallel
Strand 4
A
399 408anti-parallel
Strand 5
A
381 390anti-parallel
Strand 6
A
329 337anti-parallel
Strand 7
A
342 353anti-parallel
Strand 8
A
357 369anti-parallel
Strand 9
A
92 100anti-parallel
Strand 10
A
105 115anti-parallel
Strand 11
A
118 128anti-parallel
Strand 12
A
11 22parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
286 287anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il