Analysis of interatomic Contacts of Structural Units in PDB entry:
6WVJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WVJ entry

There are 8 chains in PDB entry 6WVJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 5	THR 228
B	GLU 5	THR 228
C	THR 2	GLU 1153
D	VAL 4	VAL 1186
F	MET 1	PHE 61
T	T 4	C 22
R	G 9	G 16
N	A 3	A 12

There are104 helices in PDB entry 6WVJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	45	Right-handed alpha
Helix 2	AA2	A	74	83	Right-handed alpha
Helix 3	AA3	A	110	112	Right-handed 310
Helix 4	AA4	A	150	155	Right-handed alpha
Helix 5	AA5	A	205	226	Right-handed alpha
Helix 6	AA6	B	31	47	Right-handed alpha
Helix 7	AA7	B	74	83	Right-handed alpha
Helix 8	AA8	B	150	155	Right-handed alpha
Helix 9	AA9	B	205	221	Right-handed alpha
Helix 10	AB1	B	221	226	Right-handed alpha
Helix 11	AB2	C	30	43	Right-handed alpha
Helix 12	AB3	C	43	53	Right-handed alpha
Helix 13	AB4	C	79	84	Right-handed alpha
Helix 14	AB5	C	191	198	Right-handed alpha
Helix 15	AB6	C	203	211	Right-handed alpha
Helix 16	AB7	C	216	224	Right-handed alpha
Helix 17	AB8	C	228	239	Right-handed alpha
Helix 18	AB9	C	247	259	Right-handed alpha
Helix 19	AC1	C	268	280	Right-handed alpha
Helix 20	AC2	C	281	286	Right-handed alpha
Helix 21	AC3	C	377	393	Right-handed alpha
Helix 22	AC4	C	411	439	Right-handed alpha
Helix 23	AC5	C	444	448	Right-handed 310
Helix 24	AC6	C	451	465	Right-handed alpha
Helix 25	AC7	C	475	483	Right-handed alpha
Helix 26	AC8	C	500	505	Right-handed alpha
Helix 27	AC9	C	507	511	Right-handed 310
Helix 28	AD1	C	567	572	Right-handed 310
Helix 29	AD2	C	582	586	Right-handed 310
Helix 30	AD3	C	614	618	Right-handed 310
Helix 31	AD4	C	633	645	Right-handed alpha
Helix 32	AD5	C	662	670	Right-handed alpha
Helix 33	AD6	C	767	771	Right-handed 310
Helix 34	AD7	C	779	784	Right-handed alpha
Helix 35	AD8	C	819	823	Right-handed 310
Helix 36	AD9	C	896	898	Right-handed 310
Helix 37	AE1	C	960	965	Right-handed alpha
Helix 38	AE2	C	967	984	Right-handed alpha
Helix 39	AE3	C	996	1008	Right-handed alpha
Helix 40	AE4	C	1043	1048	Right-handed alpha
Helix 41	AE5	C	1066	1070	Right-handed 310
Helix 42	AE6	C	1076	1087	Right-handed alpha
Helix 43	AE7	C	1088	1097	Right-handed alpha
Helix 44	AE8	C	1102	1116	Right-handed alpha
Helix 45	AE9	C	1125	1138	Right-handed alpha
Helix 46	AF1	D	16	24	Right-handed alpha
Helix 47	AF2	D	48	53	Right-handed alpha
Helix 48	AF3	D	84	90	Right-handed 310
Helix 49	AF4	D	103	108	Right-handed alpha
Helix 50	AF5	D	112	118	Right-handed alpha
Helix 51	AF6	D	121	130	Right-handed alpha
Helix 52	AF7	D	151	163	Right-handed alpha
Helix 53	AF8	D	172	180	Right-handed alpha
Helix 54	AF9	D	183	195	Right-handed alpha
Helix 55	AG1	D	200	219	Right-handed alpha
Helix 56	AG2	D	222	225	Right-handed 310
Helix 57	AG3	D	235	239	Right-handed 310
Helix 58	AG4	D	252	275	Right-handed alpha
Helix 59	AG5	D	277	297	Right-handed alpha
Helix 60	AG6	D	315	321	Right-handed alpha
Helix 61	AG7	D	325	330	Right-handed alpha
Helix 62	AG8	D	359	366	Right-handed alpha
Helix 63	AG9	D	366	377	Right-handed alpha
Helix 64	AH1	D	382	392	Right-handed alpha
Helix 65	AH2	D	395	405	Right-handed alpha
Helix 66	AH3	D	419	421	Right-handed 310
Helix 67	AH4	D	439	441	Right-handed 310
Helix 68	AH5	D	442	447	Right-handed alpha
Helix 69	AH6	D	462	472	Right-handed alpha
Helix 70	AH7	D	493	504	Right-handed alpha
Helix 71	AH8	D	518	529	Right-handed alpha
Helix 72	AH9	D	542	544	Right-handed 310
Helix 73	AI1	D	563	568	Right-handed alpha
Helix 74	AI2	D	582	588	Right-handed alpha
Helix 75	AI3	D	601	609	Right-handed alpha
Helix 76	AI4	D	616	631	Right-handed alpha
Helix 77	AI5	D	633	655	Right-handed alpha
Helix 78	AI6	D	659	663	Right-handed 310
Helix 79	AI7	D	668	690	Right-handed alpha
Helix 80	AI8	D	693	720	Right-handed alpha
Helix 81	AI9	D	724	732	Right-handed alpha
Helix 82	AJ1	D	737	746	Right-handed alpha
Helix 83	AJ2	D	772	779	Right-handed alpha
Helix 84	AJ3	D	780	808	Right-handed alpha
Helix 85	AJ4	D	838	844	Right-handed alpha
Helix 86	AJ5	D	869	880	Right-handed alpha
Helix 87	AJ6	D	888	892	Right-handed 310
Helix 88	AJ7	D	899	904	Right-handed alpha
Helix 89	AJ8	D	918	929	Right-handed alpha
Helix 90	AJ9	D	930	934	Right-handed 310
Helix 91	AK1	D	952	961	Right-handed alpha
Helix 92	AK2	D	1030	1038	Right-handed alpha
Helix 93	AK3	D	1039	1059	Right-handed alpha
Helix 94	AK4	D	1063	1073	Right-handed alpha
Helix 95	AK5	D	1096	1107	Right-handed alpha
Helix 96	AK6	D	1122	1128	Right-handed alpha
Helix 97	AK7	D	1133	1138	Right-handed alpha
Helix 98	AK8	D	1141	1153	Right-handed alpha
Helix 99	AK9	D	1160	1168	Right-handed alpha
Helix 100	AL1	D	1173	1176	Right-handed 310
Helix 101	AL2	D	1177	1182	Right-handed alpha
Helix 102	AL3	F	5	11	Right-handed alpha
Helix 103	AL4	F	15	34	Right-handed alpha
Helix 104	AL5	F	45	54	Right-handed alpha

There are 40 sheets in PDB entry 6WVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	14	first strand
Strand 2	A	20	28	anti-parallel
Strand 3	A	188	200	anti-parallel
Strand 4	A	173	185	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	102	first strand
Strand 2	A	135	146	anti-parallel
Strand 3	A	49	58	anti-parallel
Strand 4	A	164	165	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	118	120	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	108	first strand
Strand 2	A	126	129	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	149	first strand
Strand 2	A	168	169	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	12	first strand
Strand 2	B	20	28	anti-parallel
Strand 3	B	191	200	anti-parallel
Strand 4	B	173	183	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	101	first strand
Strand 2	B	136	146	anti-parallel
Strand 3	B	49	58	anti-parallel
Strand 4	B	164	165	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	118	120	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	108	first strand
Strand 2	B	126	130	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	149	first strand
Strand 2	B	168	169	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	8	first strand
Strand 2	C	12	16	anti-parallel
Strand 3	C	987	988	parallel
Strand 4	C	658	659	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	63	71	anti-parallel
Strand 3	C	89	99	anti-parallel
Strand 4	C	106	117	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	127	first strand
Strand 2	C	130	134	anti-parallel
Strand 3	C	468	470	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	409	first strand
Strand 2	C	136	140	anti-parallel
Strand 3	C	485	487	parallel
Strand 4	C	528	530	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	147	first strand
Strand 2	C	159	162	anti-parallel
Strand 3	C	171	174	anti-parallel
Strand 4	C	180	183	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	335	first strand
Strand 2	C	342	343	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	350	first strand
Strand 2	C	360	364	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	537	first strand
Strand 2	C	543	550	anti-parallel
Strand 3	C	557	565	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	537	first strand
Strand 2	C	543	550	anti-parallel
Strand 3	C	610	611	anti-parallel
Strand 4	C	574	575	parallel
Strand 5	C	591	595	anti-parallel
Strand 6	C	600	604	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	674	675	first strand
Strand 2	C	741	744	anti-parallel
Strand 3	C	727	728	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	707	711	first strand
Strand 2	C	689	694	anti-parallel
Strand 3	C	680	686	anti-parallel
Strand 4	C	735	736	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	723	724	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	748	749	first strand
Strand 2	C	752	753	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	763	first strand
Strand 2	C	955	957	parallel
Strand 3	C	774	778	anti-parallel
Strand 4	C	933	939	parallel
Strand 5	C	924	926	anti-parallel
Strand 6	C	1032	1039	anti-parallel
Strand 7	C	757	763	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	788	800	first strand
Strand 2	C	905	918	anti-parallel
Strand 3	C	885	894	anti-parallel
Strand 4	C	835	836	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	808	809	first strand
Strand 2	C	841	847	anti-parallel
Strand 3	C	873	878	anti-parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1049	1051	first strand
Strand 2	D	339	346	anti-parallel
Strand 3	D	454	458	anti-parallel
Strand 4	D	410	413	anti-parallel
Strand 5	D	423	431	anti-parallel
Strand 6	D	354	358	parallel
Strand 7	D	436	438	anti-parallel
Strand 8	D	339	346	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1074	1075	first strand
Strand 2	D	334	335	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	11	first strand
Strand 2	D	1155	1157	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	102	first strand
Strand 2	D	227	233	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	150	first strand
Strand 2	D	134	138	anti-parallel
Strand 3	D	167	169	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	243	first strand
Strand 2	D	249	251	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	515	516	first strand
Strand 2	D	538	540	parallel
Strand 3	D	557	559	anti-parallel
Strand 4	D	595	596	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	752	753	first strand
Strand 2	D	756	758	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	812	813	first strand
Strand 2	D	897	898	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	824	826	first strand
Strand 2	D	884	886	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	829	831	first strand
Strand 2	D	834	837	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	852	854	first strand
Strand 2	D	857	862	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	978	981	first strand
Strand 2	D	990	994	anti-parallel
Strand 3	D	999	1003	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1093	1095	first strand
Strand 2	D	1077	1082	anti-parallel
Strand 3	D	1115	1118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WVJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WVJ