Analysis of interatomic Contacts of Structural Units in PDB entry:
6WVT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WVT entry

There are 18 chains in PDB entry 6WVT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 4	GLU 72
B	GLY 74	PHE 375
D	GLU 4	GLU 72
D	GLY 74	PHE 375
E	GLU 4	GLU 72
E	GLY 74	PHE 375
F	GLU 4	GLU 72
F	GLY 74	PHE 375
H	GLU 4	GLU 72
H	GLY 74	PHE 375
I	GLU 4	GLU 72
I	GLY 74	PHE 375
K	LEU 698	LYS 871
L	LEU 698	LYS 871
N	LEU 698	LYS 871
O	LEU 698	LYS 871
Q	LEU 698	LYS 871
X	LEU 698	LYS 871

There are150 helices in PDB entry 6WVT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	55	61	Right-handed alpha
Helix 2	AA2	B	78	91	Right-handed alpha
Helix 3	AA3	B	97	101	Right-handed 310
Helix 4	AA4	B	112	126	Right-handed alpha
Helix 5	AA5	B	138	145	Right-handed alpha
Helix 6	AA6	B	171	175	Right-handed 310
Helix 7	AA7	B	181	193	Right-handed alpha
Helix 8	AA8	B	204	216	Right-handed alpha
Helix 9	AA9	B	222	230	Right-handed alpha
Helix 10	AB1	B	252	257	Right-handed alpha
Helix 11	AB2	B	258	262	Right-handed 310
Helix 12	AB3	B	275	283	Right-handed alpha
Helix 13	AB4	B	289	295	Right-handed alpha
Helix 14	AB5	B	301	305	Right-handed 310
Helix 15	AB6	B	308	318	Right-handed alpha
Helix 16	AB7	B	334	336	Right-handed 310
Helix 17	AB8	B	337	347	Right-handed alpha
Helix 18	AB9	B	348	353	Right-handed 310
Helix 19	AC1	B	359	363	Right-handed alpha
Helix 20	AC2	B	365	369	Right-handed 310
Helix 21	AC3	B	370	375	Right-handed alpha
Helix 22	AC4	D	55	61	Right-handed alpha
Helix 23	AC5	D	78	91	Right-handed alpha
Helix 24	AC6	D	97	101	Right-handed 310
Helix 25	AC7	D	112	126	Right-handed alpha
Helix 26	AC8	D	138	145	Right-handed alpha
Helix 27	AC9	D	171	175	Right-handed 310
Helix 28	AD1	D	181	193	Right-handed alpha
Helix 29	AD2	D	204	216	Right-handed alpha
Helix 30	AD3	D	222	230	Right-handed alpha
Helix 31	AD4	D	252	257	Right-handed alpha
Helix 32	AD5	D	258	262	Right-handed 310
Helix 33	AD6	D	275	283	Right-handed alpha
Helix 34	AD7	D	289	295	Right-handed alpha
Helix 35	AD8	D	301	305	Right-handed 310
Helix 36	AD9	D	308	318	Right-handed alpha
Helix 37	AE1	D	334	336	Right-handed 310
Helix 38	AE2	D	337	347	Right-handed alpha
Helix 39	AE3	D	348	353	Right-handed 310
Helix 40	AE4	D	359	363	Right-handed alpha
Helix 41	AE5	D	365	369	Right-handed 310
Helix 42	AE6	D	370	375	Right-handed alpha
Helix 43	AE7	E	55	61	Right-handed alpha
Helix 44	AE8	E	78	91	Right-handed alpha
Helix 45	AE9	E	97	101	Right-handed 310
Helix 46	AF1	E	112	126	Right-handed alpha
Helix 47	AF2	E	138	145	Right-handed alpha
Helix 48	AF3	E	171	175	Right-handed 310
Helix 49	AF4	E	181	193	Right-handed alpha
Helix 50	AF5	E	204	216	Right-handed alpha
Helix 51	AF6	E	222	230	Right-handed alpha
Helix 52	AF7	E	252	257	Right-handed alpha
Helix 53	AF8	E	258	262	Right-handed 310
Helix 54	AF9	E	275	283	Right-handed alpha
Helix 55	AG1	E	289	295	Right-handed alpha
Helix 56	AG2	E	301	305	Right-handed 310
Helix 57	AG3	E	308	318	Right-handed alpha
Helix 58	AG4	E	334	336	Right-handed 310
Helix 59	AG5	E	337	347	Right-handed alpha
Helix 60	AG6	E	348	353	Right-handed 310
Helix 61	AG7	E	359	363	Right-handed alpha
Helix 62	AG8	E	365	369	Right-handed 310
Helix 63	AG9	E	370	375	Right-handed alpha
Helix 64	AH1	F	55	61	Right-handed alpha
Helix 65	AH2	F	78	91	Right-handed alpha
Helix 66	AH3	F	97	101	Right-handed 310
Helix 67	AH4	F	112	126	Right-handed alpha
Helix 68	AH5	F	138	145	Right-handed alpha
Helix 69	AH6	F	171	175	Right-handed 310
Helix 70	AH7	F	181	193	Right-handed alpha
Helix 71	AH8	F	204	216	Right-handed alpha
Helix 72	AH9	F	222	230	Right-handed alpha
Helix 73	AI1	F	252	257	Right-handed alpha
Helix 74	AI2	F	258	262	Right-handed 310
Helix 75	AI3	F	275	283	Right-handed alpha
Helix 76	AI4	F	289	295	Right-handed alpha
Helix 77	AI5	F	301	305	Right-handed 310
Helix 78	AI6	F	308	318	Right-handed alpha
Helix 79	AI7	F	334	336	Right-handed 310
Helix 80	AI8	F	337	347	Right-handed alpha
Helix 81	AI9	F	348	353	Right-handed 310
Helix 82	AJ1	F	359	363	Right-handed alpha
Helix 83	AJ2	F	365	369	Right-handed 310
Helix 84	AJ3	F	370	375	Right-handed alpha
Helix 85	AJ4	H	55	61	Right-handed alpha
Helix 86	AJ5	H	78	91	Right-handed alpha
Helix 87	AJ6	H	97	101	Right-handed 310
Helix 88	AJ7	H	112	126	Right-handed alpha
Helix 89	AJ8	H	138	145	Right-handed alpha
Helix 90	AJ9	H	171	175	Right-handed 310
Helix 91	AK1	H	181	193	Right-handed alpha
Helix 92	AK2	H	204	216	Right-handed alpha
Helix 93	AK3	H	222	230	Right-handed alpha
Helix 94	AK4	H	252	257	Right-handed alpha
Helix 95	AK5	H	258	262	Right-handed 310
Helix 96	AK6	H	275	283	Right-handed alpha
Helix 97	AK7	H	289	295	Right-handed alpha
Helix 98	AK8	H	301	305	Right-handed 310
Helix 99	AK9	H	308	318	Right-handed alpha
Helix 100	AL1	H	334	336	Right-handed 310
Helix 101	AL2	H	337	347	Right-handed alpha
Helix 102	AL3	H	348	353	Right-handed 310
Helix 103	AL4	H	359	363	Right-handed alpha
Helix 104	AL5	H	365	369	Right-handed 310
Helix 105	AL6	H	370	375	Right-handed alpha
Helix 106	AL7	I	55	61	Right-handed alpha
Helix 107	AL8	I	78	91	Right-handed alpha
Helix 108	AL9	I	97	101	Right-handed 310
Helix 109	AM1	I	112	126	Right-handed alpha
Helix 110	AM2	I	138	145	Right-handed alpha
Helix 111	AM3	I	171	175	Right-handed 310
Helix 112	AM4	I	181	193	Right-handed alpha
Helix 113	AM5	I	204	216	Right-handed alpha
Helix 114	AM6	I	222	230	Right-handed alpha
Helix 115	AM7	I	252	257	Right-handed alpha
Helix 116	AM8	I	258	262	Right-handed 310
Helix 117	AM9	I	275	283	Right-handed alpha
Helix 118	AN1	I	289	295	Right-handed alpha
Helix 119	AN2	I	301	305	Right-handed 310
Helix 120	AN3	I	308	318	Right-handed alpha
Helix 121	AN4	I	334	336	Right-handed 310
Helix 122	AN5	I	337	347	Right-handed alpha
Helix 123	AN6	I	348	353	Right-handed 310
Helix 124	AN7	I	359	363	Right-handed alpha
Helix 125	AN8	I	365	369	Right-handed 310
Helix 126	AN9	I	370	375	Right-handed alpha
Helix 127	AO1	K	712	727	Right-handed alpha
Helix 128	AO2	K	739	764	Right-handed alpha
Helix 129	AO3	K	769	802	Right-handed alpha
Helix 130	AO4	K	812	843	Right-handed alpha
Helix 131	AO5	L	712	727	Right-handed alpha
Helix 132	AO6	L	739	764	Right-handed alpha
Helix 133	AO7	L	769	802	Right-handed alpha
Helix 134	AO8	L	812	843	Right-handed alpha
Helix 135	AO9	N	712	727	Right-handed alpha
Helix 136	AP1	N	739	764	Right-handed alpha
Helix 137	AP2	N	769	802	Right-handed alpha
Helix 138	AP3	N	812	843	Right-handed alpha
Helix 139	AP4	O	712	727	Right-handed alpha
Helix 140	AP5	O	739	764	Right-handed alpha
Helix 141	AP6	O	769	802	Right-handed alpha
Helix 142	AP7	O	812	843	Right-handed alpha
Helix 143	AP8	Q	712	727	Right-handed alpha
Helix 144	AP9	Q	739	764	Right-handed alpha
Helix 145	AQ1	Q	769	802	Right-handed alpha
Helix 146	AQ2	Q	812	843	Right-handed alpha
Helix 147	AQ3	X	712	727	Right-handed alpha
Helix 148	AQ4	X	739	764	Right-handed alpha
Helix 149	AQ5	X	769	802	Right-handed alpha
Helix 150	AQ6	X	812	843	Right-handed alpha

There are 30 sheets in PDB entry 6WVT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	17	21	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	160	165	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	298	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	17	21	anti-parallel
Strand 3	D	8	12	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	178	first strand
Strand 2	D	160	165	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	298	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	17	21	anti-parallel
Strand 3	E	8	12	anti-parallel
Strand 4	E	103	107	parallel
Strand 5	E	131	136	parallel
Strand 6	E	357	358	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	35	38	anti-parallel
Strand 3	E	65	68	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	75	76	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	176	178	first strand
Strand 2	E	160	165	anti-parallel
Strand 3	E	150	155	anti-parallel
Strand 4	E	297	298	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	241	first strand
Strand 2	E	247	250	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	31	first strand
Strand 2	F	17	21	anti-parallel
Strand 3	F	8	12	anti-parallel
Strand 4	F	103	107	parallel
Strand 5	F	131	136	parallel
Strand 6	F	357	358	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	54	first strand
Strand 2	F	35	38	anti-parallel
Strand 3	F	65	68	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	72	first strand
Strand 2	F	75	76	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	176	178	first strand
Strand 2	F	160	165	anti-parallel
Strand 3	F	150	155	anti-parallel
Strand 4	F	297	298	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	238	241	first strand
Strand 2	F	247	250	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	31	first strand
Strand 2	H	17	21	anti-parallel
Strand 3	H	8	12	anti-parallel
Strand 4	H	103	107	parallel
Strand 5	H	131	136	parallel
Strand 6	H	357	358	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	54	first strand
Strand 2	H	35	38	anti-parallel
Strand 3	H	65	68	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	72	first strand
Strand 2	H	75	76	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	176	178	first strand
Strand 2	H	160	165	anti-parallel
Strand 3	H	150	155	anti-parallel
Strand 4	H	297	298	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	238	241	first strand
Strand 2	H	247	250	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	29	31	first strand
Strand 2	I	17	21	anti-parallel
Strand 3	I	8	12	anti-parallel
Strand 4	I	103	107	parallel
Strand 5	I	131	136	parallel
Strand 6	I	357	358	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	53	54	first strand
Strand 2	I	35	38	anti-parallel
Strand 3	I	65	68	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	71	72	first strand
Strand 2	I	75	76	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	176	178	first strand
Strand 2	I	160	165	anti-parallel
Strand 3	I	150	155	anti-parallel
Strand 4	I	297	298	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	238	241	first strand
Strand 2	I	247	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WVT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WVT