Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 6WVW entry
There are 8 chains in PDB entry 6WVW
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
SER 28 | TRP 89 |
B
|
ALA 191 | LYS 256 |
C
|
LEU 11 | LYS 83 |
D
|
ALA 141 | LEU 203 |
E
|
GLY 27 | TRP 89 |
F
|
ALA 191 | LYS 256 |
G
|
GLU 10 | LYS 83 |
H
|
GLU 143 | GLY 204 |
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There are 8
helices in PDB entry 6WVW. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
AA1 | A
| 28 |
88 | Right-handed alpha |
Helix 2 |
AA2 | B
| 192 |
256 | Right-handed alpha |
Helix 3 |
AA3 | C
| 12 |
82 | Right-handed alpha |
Helix 4 |
AA4 | D
| 142 |
203 | Right-handed alpha |
Helix 5 |
AA5 | E
| 28 |
88 | Right-handed alpha |
Helix 6 |
AA6 | F
| 192 |
256 | Right-handed alpha |
Helix 7 |
AA7 | G
| 11 |
82 | Right-handed alpha |
Helix 8 |
AA8 | H
| 144 |
204 | Right-handed alpha |
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There are no sheets in PDB entry
6WVW
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il