Analysis of interatomic Contacts of Structural Units in PDB entry:
6WVZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WVZ entry

There are 3 chains in PDB entry 6WVZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 1	CYS 222
L	ASP 1	GLU 213
M	LYS 40	HIS 565

There are 19 helices in PDB entry 6WVZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	28	31	Right-handed 310
Helix 2	AA2	H	62	65	Right-handed 310
Helix 3	AA3	H	87	91	Right-handed 310
Helix 4	AA4	H	101	104	Right-handed 310
Helix 5	AA5	H	193	195	Right-handed 310
Helix 6	AA6	H	207	210	Right-handed 310
Helix 7	AA7	L	79	83	Right-handed 310
Helix 8	AA8	L	121	126	Right-handed alpha
Helix 9	AA9	L	183	187	Right-handed alpha
Helix 10	AB1	M	100	105	Right-handed alpha
Helix 11	AB2	M	136	139	Right-handed 310
Helix 12	AB3	M	204	209	Right-handed alpha
Helix 13	AB4	M	238	242	Right-handed 310
Helix 14	AB5	M	326	333	Right-handed alpha
Helix 15	AB6	M	367	377	Right-handed alpha
Helix 16	AB7	M	395	400	Right-handed alpha
Helix 17	AB8	M	525	530	Right-handed alpha
Helix 18	AB9	M	531	532	Right-handed 310
Helix 19	AC1	M	533	536	Right-handed 310

There are 20 sheets in PDB entry 6WVZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	106	109	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	130	first strand
Strand 2	H	141	151	anti-parallel
Strand 3	H	182	191	anti-parallel
Strand 4	H	169	171	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	130	first strand
Strand 2	H	141	151	anti-parallel
Strand 3	H	182	191	anti-parallel
Strand 4	H	175	176	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	157	160	first strand
Strand 2	H	200	206	anti-parallel
Strand 3	H	211	217	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	160	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	145	150	first strand
Strand 2	L	191	197	anti-parallel
Strand 3	L	205	210	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	45	47	first strand
Strand 2	M	509	514	anti-parallel
Strand 3	M	501	506	anti-parallel
Strand 4	M	491	493	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	52	58	first strand
Strand 2	M	61	66	anti-parallel
Strand 3	M	69	74	anti-parallel
Strand 4	M	80	82	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	117	123	first strand
Strand 2	M	129	134	anti-parallel
Strand 3	M	141	145	anti-parallel
Strand 4	M	157	161	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	182	189	first strand
Strand 2	M	192	199	anti-parallel
Strand 3	M	214	219	anti-parallel
Strand 4	M	226	227	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	182	189	first strand
Strand 2	M	192	199	anti-parallel
Strand 3	M	214	219	anti-parallel
Strand 4	M	234	235	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	248	255	first strand
Strand 2	M	258	266	anti-parallel
Strand 3	M	274	282	anti-parallel
Strand 4	M	289	300	anti-parallel
Strand 5	M	418	420	parallel
Strand 6	M	383	385	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	312	314	first strand
Strand 2	M	289	300	anti-parallel
Strand 3	M	424	427	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	316	323	first strand
Strand 2	M	341	349	anti-parallel
Strand 3	M	356	366	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	439	447	first strand
Strand 2	M	450	457	anti-parallel
Strand 3	M	461	467	anti-parallel
Strand 4	M	477	480	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	544	547	first strand
Strand 2	M	538	541	anti-parallel
Strand 3	M	556	557	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WVZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WVZ