Analysis of interatomic Contacts of Structural Units in PDB entry:
6WW2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WW2 entry

There are 4 chains in PDB entry 6WW2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 4	LYS 228
K	GLN 1	SER 120
L	ASP 2	ARG 213
R	ARG 193	ARG 536

There are 25 helices in PDB entry 6WW2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	65	68	Right-handed 310
Helix 2	AA2	H	90	94	Right-handed 310
Helix 3	AA3	H	107	112	Right-handed alpha
Helix 4	AA4	H	202	206	Right-handed 310
Helix 5	AA5	K	87	91	Right-handed 310
Helix 6	AA6	L	94	98	Right-handed 310
Helix 7	AA7	L	185	189	Right-handed alpha
Helix 8	AA8	R	211	215	Right-handed 310
Helix 9	AA9	R	228	230	Right-handed 310
Helix 10	AB1	R	231	261	Right-handed alpha
Helix 11	AB2	R	265	267	Right-handed 310
Helix 12	AB3	R	268	292	Right-handed alpha
Helix 13	AB4	R	292	297	Right-handed alpha
Helix 14	AB5	R	314	345	Right-handed alpha
Helix 15	AB6	R	349	379	Right-handed alpha
Helix 16	AB7	R	396	404	Right-handed alpha
Helix 17	AB8	R	404	1025	Right-handed alpha
Helix 18	AB9	R	1029	1049	Right-handed alpha
Helix 19	AC1	R	1064	1086	Right-handed alpha
Helix 20	AC2	R	1089	1098	Right-handed alpha
Helix 21	AC3	R	1098	1106	Right-handed alpha
Helix 22	AC4	R	1106	479	Right-handed alpha
Helix 23	AC5	R	500	511	Right-handed alpha
Helix 24	AC6	R	511	520	Right-handed alpha
Helix 25	AC7	R	523	536	Right-handed alpha

There are 13 sheets in PDB entry 6WW2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	20	28	anti-parallel
Strand 3	H	81	87	anti-parallel
Strand 4	H	71	74	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	15	first strand
Strand 2	H	121	125	parallel
Strand 3	H	95	103	anti-parallel
Strand 4	H	35	42	anti-parallel
Strand 5	H	48	54	anti-parallel
Strand 6	H	62	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	138	first strand
Strand 2	H	152	159	anti-parallel
Strand 3	H	190	196	anti-parallel
Strand 4	H	178	179	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	138	first strand
Strand 2	H	152	159	anti-parallel
Strand 3	H	190	196	anti-parallel
Strand 4	H	183	184	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	165	168	first strand
Strand 2	H	208	213	anti-parallel
Strand 3	H	222	225	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	16	25	anti-parallel
Strand 3	K	78	86	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	12	first strand
Strand 2	K	115	119	parallel
Strand 3	K	92	98	anti-parallel
Strand 4	K	34	39	anti-parallel
Strand 5	K	47	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	104	108	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	120	first strand
Strand 2	L	131	141	anti-parallel
Strand 3	L	175	184	anti-parallel
Strand 4	L	161	165	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	146	147	first strand
Strand 2	L	193	200	anti-parallel
Strand 3	L	150	151	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	146	147	first strand
Strand 2	L	193	200	anti-parallel
Strand 3	L	207	212	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	381	383	first strand
Strand 2	R	390	392	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WW2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WW2