Analysis of interatomic Contacts of Structural Units in PDB entry:
6WW5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WW5 entry

There are 3 chains in PDB entry 6WW5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 18	GLN 462
B	LEU 18	GLN 462
C	GLU 1	GLU 1

There are 58 helices in PDB entry 6WW5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	39	Right-handed alpha
Helix 2	AA2	A	42	61	Right-handed alpha
Helix 3	AA3	A	65	79	Right-handed alpha
Helix 4	AA4	A	84	90	Right-handed alpha
Helix 5	AA5	A	91	93	Right-handed 310
Helix 6	AA6	A	94	113	Right-handed alpha
Helix 7	AA7	A	114	127	Right-handed alpha
Helix 8	AA8	A	130	146	Right-handed alpha
Helix 9	AA9	A	151	166	Right-handed alpha
Helix 10	AB1	A	175	193	Right-handed alpha
Helix 11	AB2	A	200	211	Right-handed alpha
Helix 12	AB3	A	214	240	Right-handed alpha
Helix 13	AB4	A	260	277	Right-handed alpha
Helix 14	AB5	A	278	284	Right-handed alpha
Helix 15	AB6	A	290	307	Right-handed alpha
Helix 16	AB7	A	310	318	Right-handed alpha
Helix 17	AB8	A	319	339	Right-handed alpha
Helix 18	AB9	A	340	349	Right-handed alpha
Helix 19	AC1	A	349	356	Right-handed alpha
Helix 20	AC2	A	358	373	Right-handed alpha
Helix 21	AC3	A	377	397	Right-handed alpha
Helix 22	AC4	A	399	411	Right-handed alpha
Helix 23	AC5	A	421	431	Right-handed alpha
Helix 24	AC6	A	435	462	Right-handed alpha
Helix 25	AC7	B	19	39	Right-handed alpha
Helix 26	AC8	B	42	61	Right-handed alpha
Helix 27	AC9	B	65	79	Right-handed alpha
Helix 28	AD1	B	84	90	Right-handed alpha
Helix 29	AD2	B	91	93	Right-handed 310
Helix 30	AD3	B	94	113	Right-handed alpha
Helix 31	AD4	B	114	127	Right-handed alpha
Helix 32	AD5	B	130	146	Right-handed alpha
Helix 33	AD6	B	151	166	Right-handed alpha
Helix 34	AD7	B	175	193	Right-handed alpha
Helix 35	AD8	B	200	211	Right-handed alpha
Helix 36	AD9	B	214	240	Right-handed alpha
Helix 37	AE1	B	260	277	Right-handed alpha
Helix 38	AE2	B	278	284	Right-handed alpha
Helix 39	AE3	B	290	307	Right-handed alpha
Helix 40	AE4	B	310	318	Right-handed alpha
Helix 41	AE5	B	319	339	Right-handed alpha
Helix 42	AE6	B	340	349	Right-handed alpha
Helix 43	AE7	B	349	356	Right-handed alpha
Helix 44	AE8	B	358	373	Right-handed alpha
Helix 45	AE9	B	377	397	Right-handed alpha
Helix 46	AF1	B	399	411	Right-handed alpha
Helix 47	AF2	B	421	431	Right-handed alpha
Helix 48	AF3	B	435	462	Right-handed alpha
Helix 49	AF4	C	28	32	Right-handed 310
Helix 50	AF5	C	87	91	Right-handed 310
Helix 51	AF6	E	28	32	Right-handed 310
Helix 52	AF7	E	87	91	Right-handed 310
Helix 53	AF8	F	79	83	Right-handed 310
Helix 54	AF9	F	123	128	Right-handed alpha
Helix 55	AG1	F	183	188	Right-handed alpha
Helix 56	AG2	D	79	83	Right-handed 310
Helix 57	AG3	D	123	128	Right-handed alpha
Helix 58	AG4	D	183	188	Right-handed alpha

There are 22 sheets in PDB entry 6WW5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	17	25	anti-parallel
Strand 3	C	80	84	anti-parallel
Strand 4	C	68	71	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	121	125	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	49	52	anti-parallel
Strand 6	C	57	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	137	first strand
Strand 2	C	149	159	anti-parallel
Strand 3	C	190	199	anti-parallel
Strand 4	C	177	179	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	137	first strand
Strand 2	C	149	159	anti-parallel
Strand 3	C	190	199	anti-parallel
Strand 4	C	183	184	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	168	first strand
Strand 2	C	208	213	anti-parallel
Strand 3	C	222	225	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	80	84	anti-parallel
Strand 4	E	68	71	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	121	125	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	49	52	anti-parallel
Strand 6	E	57	60	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	137	first strand
Strand 2	E	149	159	anti-parallel
Strand 3	E	190	199	anti-parallel
Strand 4	E	177	179	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	137	first strand
Strand 2	E	149	159	anti-parallel
Strand 3	E	190	199	anti-parallel
Strand 4	E	183	184	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	165	168	first strand
Strand 2	E	208	213	anti-parallel
Strand 3	E	222	225	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	7	first strand
Strand 2	F	19	24	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	65	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	102	105	parallel
Strand 3	F	85	89	anti-parallel
Strand 4	F	34	38	anti-parallel
Strand 5	F	45	48	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	117	first strand
Strand 2	F	134	139	anti-parallel
Strand 3	F	173	176	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	129	132	first strand
Strand 2	F	178	182	anti-parallel
Strand 3	F	159	160	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	154	first strand
Strand 2	F	147	150	anti-parallel
Strand 3	F	191	198	anti-parallel
Strand 4	F	201	206	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	154	first strand
Strand 2	F	147	150	anti-parallel
Strand 3	F	191	198	anti-parallel
Strand 4	F	209	210	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	65	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	102	105	parallel
Strand 3	D	85	89	anti-parallel
Strand 4	D	34	38	anti-parallel
Strand 5	D	45	48	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	117	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	173	176	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	132	first strand
Strand 2	D	178	182	anti-parallel
Strand 3	D	159	160	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	147	150	anti-parallel
Strand 3	D	191	198	anti-parallel
Strand 4	D	201	206	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	147	150	anti-parallel
Strand 3	D	191	198	anti-parallel
Strand 4	D	209	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WW5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WW5