Analysis of interatomic Contacts of Structural Units in PDB entry:
6WW7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WW7 entry

There are 9 chains in PDB entry 6WW7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 24	ARG 993
B	VAL 10	GLU 290
C	GLU 5	PHE 252
D	UNK 170	UNK 183
E	PRO 3	PRO 103
F	PRO 12	TYR 110
G	ASP 43	GLU 153
H	VAL 4	LEU 209
I	GLY 50	GLU 206

There are 55 helices in PDB entry 6WW7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	262	264	Right-handed 310
Helix 2	2	A	448	450	Right-handed 310
Helix 3	3	A	469	472	Right-handed alpha
Helix 4	4	A	480	500	Right-handed alpha
Helix 5	5	A	656	665	Right-handed alpha
Helix 6	6	A	875	877	Right-handed 310
Helix 7	7	A	888	893	Right-handed alpha
Helix 8	8	A	906	908	Right-handed 310
Helix 9	9	A	962	992	Right-handed alpha
Helix 10	10	B	12	24	Right-handed alpha
Helix 11	11	B	30	41	Right-handed alpha
Helix 12	12	B	52	66	Right-handed alpha
Helix 13	13	B	69	82	Right-handed alpha
Helix 14	14	B	88	100	Right-handed alpha
Helix 15	15	B	104	116	Right-handed alpha
Helix 16	16	B	121	133	Right-handed alpha
Helix 17	17	B	137	150	Right-handed alpha
Helix 18	18	B	155	167	Right-handed alpha
Helix 19	19	B	171	184	Right-handed alpha
Helix 20	20	B	189	202	Right-handed alpha
Helix 21	21	B	207	222	Right-handed alpha
Helix 22	22	B	226	241	Right-handed alpha
Helix 23	23	B	247	274	Right-handed alpha
Helix 24	24	B	280	288	Right-handed 310
Helix 25	25	C	10	38	Right-handed alpha
Helix 26	26	C	46	63	Right-handed alpha
Helix 27	27	C	70	81	Right-handed alpha
Helix 28	28	C	87	90	Right-handed 310
Helix 29	29	C	115	131	Right-handed alpha
Helix 30	30	C	146	152	Right-handed 310
Helix 31	31	C	168	186	Right-handed alpha
Helix 32	32	C	214	227	Right-handed alpha
Helix 33	33	C	237	242	Right-handed alpha
Helix 34	34	E	6	34	Right-handed alpha
Helix 35	35	E	43	63	Right-handed alpha
Helix 36	36	E	72	76	Right-handed 310
Helix 37	37	E	81	83	Right-handed 310
Helix 38	38	E	96	100	Right-handed alpha
Helix 39	39	F	16	44	Right-handed alpha
Helix 40	40	F	49	70	Right-handed alpha
Helix 41	41	F	89	107	Right-handed alpha
Helix 42	42	F	82	86	Right-handed 310
Helix 43	43	G	58	61	Right-handed 310
Helix 44	44	H	8	20	Right-handed alpha
Helix 45	45	H	68	85	Right-handed alpha
Helix 46	46	H	106	118	Right-handed alpha
Helix 47	47	H	164	176	Right-handed alpha
Helix 48	48	H	179	182	Right-handed 310
Helix 49	49	H	186	191	Right-handed alpha
Helix 50	50	H	200	207	Right-handed alpha
Helix 51	51	I	92	104	Right-handed alpha
Helix 52	52	I	134	140	Right-handed alpha
Helix 53	53	I	175	178	Right-handed 310
Helix 54	54	I	199	205	Right-handed alpha
Helix 55	55	F	74	77	Right-handed 310

There are 23 sheets in PDB entry 6WW7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	942	947	anti-parallel
Strand 3	A	933	938	anti-parallel
Strand 4	A	921	926	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	A	54	58	anti-parallel
Strand 3	A	62	66	anti-parallel
Strand 4	A	73	78	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	93	first strand
Strand 2	A	96	101	anti-parallel
Strand 3	A	106	111	anti-parallel
Strand 4	A	119	122	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	134	first strand
Strand 2	A	142	147	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	161	165	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	179	first strand
Strand 2	A	185	192	anti-parallel
Strand 3	A	196	203	anti-parallel
Strand 4	A	209	215	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	229	first strand
Strand 2	A	234	239	anti-parallel
Strand 3	A	244	249	anti-parallel
Strand 4	A	257	260	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	277	first strand
Strand 2	A	290	294	anti-parallel
Strand 3	A	299	305	anti-parallel
Strand 4	A	310	317	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	394	first strand
Strand 2	A	372	379	anti-parallel
Strand 3	A	332	338	anti-parallel
Strand 4	A	319	325	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	446	first strand
Strand 2	A	429	433	anti-parallel
Strand 3	A	417	425	anti-parallel
Strand 4	A	402	411	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	459	first strand
Strand 2	A	534	540	anti-parallel
Strand 3	A	544	549	anti-parallel
Strand 4	A	555	560	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	599	604	first strand
Strand 2	A	586	592	anti-parallel
Strand 3	A	569	576	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	649	652	first strand
Strand 2	A	639	644	anti-parallel
Strand 3	A	623	629	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	181	first strand
Strand 2	A	670	675	parallel
Strand 3	A	680	686	anti-parallel
Strand 4	A	692	699	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	723	725	first strand
Strand 2	A	731	733	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	711	first strand
Strand 2	A	740	747	anti-parallel
Strand 3	A	756	763	anti-parallel
Strand 4	A	769	776	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	784	786	first strand
Strand 2	A	790	797	anti-parallel
Strand 3	A	802	811	anti-parallel
Strand 4	A	832	840	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	846	849	first strand
Strand 2	A	860	864	anti-parallel
Strand 3	A	870	874	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	83	86	first strand
Strand 2	G	47	51	anti-parallel
Strand 3	G	138	140	parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	74	76	first strand
Strand 2	G	66	69	anti-parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	108	112	anti-parallel
Strand 5	G	118	121	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	92	94	first strand
Strand 2	H	124	127	parallel
Strand 3	H	141	144	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	62	first strand
Strand 2	H	26	33	anti-parallel
Strand 3	H	87	91	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	128	133	first strand
Strand 2	I	107	112	anti-parallel
Strand 3	I	52	59	anti-parallel
Strand 4	I	69	77	anti-parallel
Strand 5	I	82	87	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	182	188	first strand
Strand 2	I	143	150	parallel
Strand 3	I	156	162	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WW7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WW7