Analysis of interatomic Contacts of Structural Units in PDB entry:
6WWA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WWA entry

There are 6 chains in PDB entry 6WWA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 12HIS 208
D
 GLY 12HIS 208
C
 GLY 12HIS 208
B
 GLY 12HIS 208
Y
 SER 2ARG 92
X
 SER 2SER 91
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6WWA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 34Right-handed alpha
Helix 2
AA2
A
38 40Right-handed 310
Helix 3
AA3
A
57 77Right-handed alpha
Helix 4
AA4
A
116 132Right-handed alpha
Helix 5
AA5
A
132 137Right-handed alpha
Helix 6
AA6
A
175 180Right-handed alpha
Helix 7
AA7
D
13 34Right-handed alpha
Helix 8
AA8
D
38 40Right-handed 310
Helix 9
AA9
D
57 78Right-handed alpha
Helix 10
AB1
D
116 123Right-handed alpha
Helix 11
AB2
D
123 132Right-handed alpha
Helix 12
AB3
D
133 136Right-handed 310
Helix 13
AB4
D
159 164Right-handed 310
Helix 14
AB5
D
175 179Right-handed 310
Helix 15
AB6
C
14 34Right-handed alpha
Helix 16
AB7
C
38 40Right-handed 310
Helix 17
AB8
C
57 77Right-handed alpha
Helix 18
AB9
C
120 135Right-handed alpha
Helix 19
AC1
B
14 34Right-handed alpha
Helix 20
AC2
B
57 77Right-handed alpha
Helix 21
AC3
B
120 135Right-handed alpha
Helix 22
AC4
Y
49 57Right-handed alpha
Helix 23
AC5
X
49 59Right-handed alpha
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There are 10 sheets in PDB entry 6WWA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 47first strand
Strand 2
A
50 55anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 151first strand
Strand 2
A
82 88anti-parallel
Strand 3
A
94 103anti-parallel
Strand 4
A
198 205anti-parallel
Strand 5
A
185 193anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
X
82 84anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
42 47first strand
Strand 2
D
50 55anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
145 151first strand
Strand 2
D
82 88anti-parallel
Strand 3
D
94 103anti-parallel
Strand 4
D
198 206anti-parallel
Strand 5
D
184 193anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
171 173first strand
Strand 2
Y
82 84anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 47first strand
Strand 2
C
50 55anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
145 151first strand
Strand 2
C
82 88anti-parallel
Strand 3
C
94 102anti-parallel
Strand 4
C
199 206anti-parallel
Strand 5
Y
63 64anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 47first strand
Strand 2
B
50 55anti-parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 205first strand
Strand 2
B
94 101anti-parallel
Strand 3
B
82 88anti-parallel
Strand 4
B
145 152anti-parallel
Strand 5
X
3 7anti-parallel
Strand 6
X
35 39parallel
Strand 7
Y
35 38anti-parallel
Strand 8
Y
3 6parallel
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