Analysis of interatomic Contacts of Structural Units in PDB entry:
6WXP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WXP entry

There are 6 chains in PDB entry 6WXP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET -1	LEU 165
B	MET -1	GLU 163
C	MET -1	ASP 156
D	GLY 0	LYS 166
E	ASP 1	GLN 162
F	GLY 0	ALA 164

There are 36 helices in PDB entry 6WXP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	23	Right-handed alpha
Helix 2	AA2	A	34	45	Right-handed alpha
Helix 3	AA3	A	64	82	Right-handed alpha
Helix 4	AA4	A	103	122	Right-handed alpha
Helix 5	AA5	A	132	146	Right-handed alpha
Helix 6	AA6	A	157	162	Right-handed alpha
Helix 7	AA7	A	163	165	Right-handed 310
Helix 8	AA8	B	9	23	Right-handed alpha
Helix 9	AA9	B	34	45	Right-handed alpha
Helix 10	AB1	B	64	82	Right-handed alpha
Helix 11	AB2	B	103	121	Right-handed alpha
Helix 12	AB3	B	130	146	Right-handed alpha
Helix 13	AB4	B	157	162	Right-handed alpha
Helix 14	AB5	C	9	23	Right-handed alpha
Helix 15	AB6	C	34	44	Right-handed alpha
Helix 16	AB7	C	64	82	Right-handed alpha
Helix 17	AB8	C	103	122	Right-handed alpha
Helix 18	AB9	C	134	146	Right-handed alpha
Helix 19	AC1	D	9	23	Right-handed alpha
Helix 20	AC2	D	34	43	Right-handed alpha
Helix 21	AC3	D	64	82	Right-handed alpha
Helix 22	AC4	D	103	122	Right-handed alpha
Helix 23	AC5	D	135	146	Right-handed alpha
Helix 24	AC6	D	157	162	Right-handed alpha
Helix 25	AC7	D	163	165	Right-handed 310
Helix 26	AC8	E	11	21	Right-handed alpha
Helix 27	AC9	E	38	43	Right-handed alpha
Helix 28	AD1	E	68	82	Right-handed alpha
Helix 29	AD2	E	103	122	Right-handed alpha
Helix 30	AD3	E	135	147	Right-handed alpha
Helix 31	AD4	F	9	23	Right-handed alpha
Helix 32	AD5	F	34	44	Right-handed alpha
Helix 33	AD6	F	72	81	Right-handed alpha
Helix 34	AD7	F	106	122	Right-handed alpha
Helix 35	AD8	F	136	144	Right-handed alpha
Helix 36	AD9	F	160	164	Right-handed 310

There are 6 sheets in PDB entry 6WXP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	6	first strand
Strand 2	A	28	32	parallel
Strand 3	A	48	52	parallel
Strand 4	A	151	155	parallel
Strand 5	B	2	6	parallel
Strand 6	B	28	32	parallel
Strand 7	B	48	52	parallel
Strand 8	B	151	155	parallel
Strand 9	A	2	6	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	129	first strand
Strand 2	A	56	61	anti-parallel
Strand 3	A	94	100	anti-parallel
Strand 4	A	85	91	anti-parallel
Strand 5	B	85	91	anti-parallel
Strand 6	B	94	100	anti-parallel
Strand 7	B	56	61	anti-parallel
Strand 8	B	124	127	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	6	first strand
Strand 2	C	28	32	parallel
Strand 3	C	48	51	parallel
Strand 4	C	150	153	parallel
Strand 5	D	2	6	parallel
Strand 6	D	28	32	parallel
Strand 7	D	48	52	parallel
Strand 8	D	150	155	parallel
Strand 9	C	2	6	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	127	first strand
Strand 2	C	56	61	anti-parallel
Strand 3	C	94	100	anti-parallel
Strand 4	C	85	91	anti-parallel
Strand 5	D	85	91	anti-parallel
Strand 6	D	94	100	anti-parallel
Strand 7	D	56	61	anti-parallel
Strand 8	D	124	125	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	5	first strand
Strand 2	E	28	32	parallel
Strand 3	E	48	51	parallel
Strand 4	E	151	155	parallel
Strand 5	F	2	6	parallel
Strand 6	F	28	31	parallel
Strand 7	F	48	52	parallel
Strand 8	F	151	154	parallel
Strand 9	E	2	5	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	59	first strand
Strand 2	E	94	100	anti-parallel
Strand 3	E	85	91	anti-parallel
Strand 4	F	85	91	anti-parallel
Strand 5	F	94	98	anti-parallel
Strand 6	F	58	61	anti-parallel
Strand 7	F	124	126	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WXP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WXP