Analysis of interatomic Contacts of Structural Units in PDB entry:
6WXX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WXX entry

There are 6 chains in PDB entry 6WXX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LYS 2	LEU 373
A	LYS 2	LEU 373
D	LYS 2	LEU 373
C	LYS 2	LEU 373
Y	A 1	A 4
X	A 1	A 4

There are 73 helices in PDB entry 6WXX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	14	29	Right-handed alpha
Helix 2	AA2	B	40	45	Right-handed alpha
Helix 3	AA3	B	46	56	Right-handed alpha
Helix 4	AA4	B	73	85	Right-handed alpha
Helix 5	AA5	B	101	113	Right-handed alpha
Helix 6	AA6	B	146	153	Right-handed alpha
Helix 7	AA7	B	167	172	Right-handed alpha
Helix 8	AA8	B	173	179	Right-handed alpha
Helix 9	AA9	B	182	194	Right-handed alpha
Helix 10	AB1	B	195	205	Right-handed alpha
Helix 11	AB2	B	209	213	Right-handed 310
Helix 12	AB3	B	214	220	Right-handed alpha
Helix 13	AB4	B	227	238	Right-handed alpha
Helix 14	AB5	B	246	254	Right-handed alpha
Helix 15	AB6	B	255	270	Right-handed alpha
Helix 16	AB7	B	314	337	Right-handed alpha
Helix 17	AB8	B	353	364	Right-handed alpha
Helix 18	AB9	A	14	28	Right-handed alpha
Helix 19	AC1	A	40	45	Right-handed alpha
Helix 20	AC2	A	46	56	Right-handed alpha
Helix 21	AC3	A	73	85	Right-handed alpha
Helix 22	AC4	A	101	113	Right-handed alpha
Helix 23	AC5	A	146	153	Right-handed alpha
Helix 24	AC6	A	167	179	Right-handed alpha
Helix 25	AC7	A	182	194	Right-handed alpha
Helix 26	AC8	A	195	202	Right-handed alpha
Helix 27	AC9	A	209	213	Right-handed 310
Helix 28	AD1	A	214	220	Right-handed alpha
Helix 29	AD2	A	227	238	Right-handed alpha
Helix 30	AD3	A	247	254	Right-handed alpha
Helix 31	AD4	A	255	270	Right-handed alpha
Helix 32	AD5	A	315	337	Right-handed alpha
Helix 33	AD6	A	353	364	Right-handed alpha
Helix 34	AD7	A	369	373	Right-handed 310
Helix 35	AD8	D	14	29	Right-handed alpha
Helix 36	AD9	D	40	45	Right-handed alpha
Helix 37	AE1	D	46	56	Right-handed alpha
Helix 38	AE2	D	73	85	Right-handed alpha
Helix 39	AE3	D	101	113	Right-handed alpha
Helix 40	AE4	D	146	154	Right-handed alpha
Helix 41	AE5	D	167	172	Right-handed alpha
Helix 42	AE6	D	173	178	Right-handed alpha
Helix 43	AE7	D	179	181	Right-handed 310
Helix 44	AE8	D	182	194	Right-handed alpha
Helix 45	AE9	D	195	205	Right-handed alpha
Helix 46	AF1	D	209	213	Right-handed 310
Helix 47	AF2	D	214	220	Right-handed alpha
Helix 48	AF3	D	227	238	Right-handed alpha
Helix 49	AF4	D	241	244	Right-handed 310
Helix 50	AF5	D	247	254	Right-handed alpha
Helix 51	AF6	D	255	270	Right-handed alpha
Helix 52	AF7	D	315	337	Right-handed alpha
Helix 53	AF8	D	353	363	Right-handed alpha
Helix 54	AF9	D	369	373	Right-handed 310
Helix 55	AG1	C	14	29	Right-handed alpha
Helix 56	AG2	C	40	45	Right-handed alpha
Helix 57	AG3	C	46	56	Right-handed alpha
Helix 58	AG4	C	73	85	Right-handed alpha
Helix 59	AG5	C	101	113	Right-handed alpha
Helix 60	AG6	C	146	153	Right-handed alpha
Helix 61	AG7	C	167	172	Right-handed alpha
Helix 62	AG8	C	173	178	Right-handed alpha
Helix 63	AG9	C	179	181	Right-handed 310
Helix 64	AH1	C	182	194	Right-handed alpha
Helix 65	AH2	C	195	205	Right-handed alpha
Helix 66	AH3	C	209	213	Right-handed 310
Helix 67	AH4	C	215	220	Right-handed alpha
Helix 68	AH5	C	227	238	Right-handed alpha
Helix 69	AH6	C	247	254	Right-handed alpha
Helix 70	AH7	C	255	269	Right-handed alpha
Helix 71	AH8	C	317	337	Right-handed alpha
Helix 72	AH9	C	353	364	Right-handed alpha
Helix 73	AI1	C	369	373	Right-handed 310

There are 11 sheets in PDB entry 6WXX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	69	first strand
Strand 2	B	32	39	parallel
Strand 3	B	4	9	parallel
Strand 4	B	92	96	parallel
Strand 5	B	118	122	parallel
Strand 6	B	129	133	anti-parallel
Strand 7	B	137	139	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	159	first strand
Strand 2	B	273	286	anti-parallel
Strand 3	B	289	299	anti-parallel
Strand 4	B	304	310	anti-parallel
Strand 5	B	341	347	parallel
Strand 6	B	365	368	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	69	first strand
Strand 2	A	32	39	parallel
Strand 3	A	4	9	parallel
Strand 4	A	92	96	parallel
Strand 5	A	118	122	parallel
Strand 6	A	129	133	anti-parallel
Strand 7	A	137	139	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	159	first strand
Strand 2	A	273	286	anti-parallel
Strand 3	A	289	299	anti-parallel
Strand 4	A	304	310	anti-parallel
Strand 5	A	341	347	parallel
Strand 6	A	365	368	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	245	246	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	69	first strand
Strand 2	D	32	39	parallel
Strand 3	D	4	9	parallel
Strand 4	D	92	96	parallel
Strand 5	D	118	122	parallel
Strand 6	D	129	133	anti-parallel
Strand 7	D	137	139	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	159	first strand
Strand 2	D	273	286	anti-parallel
Strand 3	D	289	299	anti-parallel
Strand 4	D	304	309	anti-parallel
Strand 5	D	341	346	parallel
Strand 6	D	365	368	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	208	first strand
Strand 2	D	245	246	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	69	first strand
Strand 2	C	32	39	parallel
Strand 3	C	4	9	parallel
Strand 4	C	92	96	parallel
Strand 5	C	118	122	parallel
Strand 6	C	129	133	anti-parallel
Strand 7	C	137	139	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	273	286	anti-parallel
Strand 3	C	289	299	anti-parallel
Strand 4	C	304	310	anti-parallel
Strand 5	C	341	347	parallel
Strand 6	C	365	368	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	208	first strand
Strand 2	C	245	246	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WXX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WXX