Analysis of interatomic Contacts of Structural Units in PDB entry:
6WY6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WY6 entry

There are 4 chains in PDB entry 6WY6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 2GLY 116
A
 SER 3PHE 115
C
 ASP 1221LEU 1246
D
 PHE 1226LEU 1246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6WY6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
4 9Right-handed alpha
Helix 2
AA2
B
10 25Right-handed alpha
Helix 3
AA3
B
56 68Right-handed alpha
Helix 4
AA4
B
90 99Right-handed alpha
Helix 5
AA5
A
4 9Right-handed alpha
Helix 6
AA6
A
10 25Right-handed alpha
Helix 7
AA7
A
56 69Right-handed alpha
Helix 8
AA8
A
90 99Right-handed alpha
Helix 9
AA9
C
1220 1224Right-handed 310
Helix 10
AB1
C
1228 1235Right-handed alpha
Helix 11
AB2
C
1242 1247Right-handed 310
Helix 12
AB3
D
1242 1247Right-handed 310
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There are 2 sheets in PDB entry 6WY6. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
105 110anti-parallel
Strand 3
B
28 35parallel
Strand 4
B
48 52anti-parallel
Strand 5
D
1239 1240parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
105 110anti-parallel
Strand 3
A
28 35parallel
Strand 4
A
48 52anti-parallel
Strand 5
C
1239 1240parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il