Analysis of interatomic Contacts of Structural Units in PDB entry:
6WY8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WY8 entry

There are 4 chains in PDB entry 6WY8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 363
B	MET 1	SER 384
C	MET 1	SER 364
D	MET 1	THR 202

There are 70 helices in PDB entry 6WY8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	24	Right-handed alpha
Helix 2	AA2	A	25	34	Right-handed alpha
Helix 3	AA3	A	40	50	Right-handed alpha
Helix 4	AA4	A	58	62	Right-handed 310
Helix 5	AA5	A	66	81	Right-handed alpha
Helix 6	AA6	A	86	101	Right-handed alpha
Helix 7	AA7	A	102	107	Right-handed alpha
Helix 8	AA8	A	108	114	Right-handed alpha
Helix 9	AA9	A	214	249	Right-handed alpha
Helix 10	AB1	A	259	289	Right-handed alpha
Helix 11	AB2	A	294	320	Right-handed alpha
Helix 12	AB3	A	321	325	Right-handed 310
Helix 13	AB4	A	329	342	Right-handed alpha
Helix 14	AB5	A	346	363	Right-handed alpha
Helix 15	AB6	B	6	23	Right-handed alpha
Helix 16	AB7	B	25	36	Right-handed alpha
Helix 17	AB8	B	37	39	Right-handed 310
Helix 18	AB9	B	41	52	Right-handed alpha
Helix 19	AC1	B	60	64	Right-handed 310
Helix 20	AC2	B	69	83	Right-handed alpha
Helix 21	AC3	B	88	94	Right-handed alpha
Helix 22	AC4	B	94	103	Right-handed alpha
Helix 23	AC5	B	104	117	Right-handed alpha
Helix 24	AC6	B	134	138	Right-handed 310
Helix 25	AC7	B	178	181	Right-handed 310
Helix 26	AC8	B	230	235	Right-handed alpha
Helix 27	AC9	B	238	247	Right-handed alpha
Helix 28	AD1	B	248	267	Right-handed alpha
Helix 29	AD2	B	268	270	Right-handed 310
Helix 30	AD3	B	271	301	Right-handed alpha
Helix 31	AD4	B	305	331	Right-handed alpha
Helix 32	AD5	B	332	337	Right-handed 310
Helix 33	AD6	B	345	347	Right-handed 310
Helix 34	AD7	B	348	358	Right-handed alpha
Helix 35	AD8	B	366	380	Right-handed alpha
Helix 36	AD9	C	6	24	Right-handed alpha
Helix 37	AE1	C	25	33	Right-handed alpha
Helix 38	AE2	C	40	50	Right-handed alpha
Helix 39	AE3	C	58	62	Right-handed 310
Helix 40	AE4	C	66	81	Right-handed alpha
Helix 41	AE5	C	86	101	Right-handed alpha
Helix 42	AE6	C	102	107	Right-handed alpha
Helix 43	AE7	C	108	114	Right-handed alpha
Helix 44	AE8	C	214	249	Right-handed alpha
Helix 45	AE9	C	259	289	Right-handed alpha
Helix 46	AF1	C	294	318	Right-handed alpha
Helix 47	AF2	C	319	325	Right-handed 310
Helix 48	AF3	C	329	341	Right-handed alpha
Helix 49	AF4	C	346	363	Right-handed alpha
Helix 50	AF5	D	6	24	Right-handed alpha
Helix 51	AF6	D	25	36	Right-handed alpha
Helix 52	AF7	D	37	39	Right-handed 310
Helix 53	AF8	D	41	52	Right-handed alpha
Helix 54	AF9	D	60	64	Right-handed 310
Helix 55	AG1	D	69	83	Right-handed alpha
Helix 56	AG2	D	88	94	Right-handed alpha
Helix 57	AG3	D	94	103	Right-handed alpha
Helix 58	AG4	D	104	117	Right-handed alpha
Helix 59	AG5	D	134	138	Right-handed 310
Helix 60	AG6	D	178	181	Right-handed 310
Helix 61	AG7	D	229	236	Right-handed alpha
Helix 62	AG8	D	238	248	Right-handed alpha
Helix 63	AG9	D	248	266	Right-handed alpha
Helix 64	AH1	D	267	270	Right-handed 310
Helix 65	AH2	D	271	301	Right-handed alpha
Helix 66	AH3	D	305	331	Right-handed alpha
Helix 67	AH4	D	332	337	Right-handed 310
Helix 68	AH5	D	344	347	Right-handed 310
Helix 69	AH6	D	348	358	Right-handed alpha
Helix 70	AH7	D	366	380	Right-handed alpha

There are 10 sheets in PDB entry 6WY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	122	first strand
Strand 2	A	162	169	parallel
Strand 3	A	137	141	parallel
Strand 4	A	144	154	anti-parallel
Strand 5	A	197	210	anti-parallel
Strand 6	A	185	191	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	122	first strand
Strand 2	A	162	169	parallel
Strand 3	A	172	179	anti-parallel
Strand 4	A	197	210	anti-parallel
Strand 5	A	185	191	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	251	first strand
Strand 2	A	254	255	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	125	first strand
Strand 2	B	166	172	parallel
Strand 3	B	183	189	anti-parallel
Strand 4	B	223	224	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	145	first strand
Strand 2	B	148	156	anti-parallel
Strand 3	B	207	219	anti-parallel
Strand 4	B	195	201	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	122	first strand
Strand 2	C	162	169	parallel
Strand 3	C	137	141	parallel
Strand 4	C	144	154	anti-parallel
Strand 5	C	197	210	anti-parallel
Strand 6	C	185	191	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	122	first strand
Strand 2	C	162	169	parallel
Strand 3	C	172	179	anti-parallel
Strand 4	C	197	210	anti-parallel
Strand 5	C	185	191	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	251	first strand
Strand 2	C	254	255	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	125	first strand
Strand 2	D	166	172	parallel
Strand 3	D	183	189	anti-parallel
Strand 4	D	223	224	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	145	first strand
Strand 2	D	148	156	anti-parallel
Strand 3	D	207	219	anti-parallel
Strand 4	D	195	201	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WY8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WY8