Analysis of interatomic Contacts of Structural Units in PDB entry:
6WY9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WY9 entry

There are 2 chains in PDB entry 6WY9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5SER 384
B
 THR 4SER 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 6WY9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 22Right-handed alpha
Helix 2
AA2
A
26 36Right-handed alpha
Helix 3
AA3
A
37 39Right-handed 310
Helix 4
AA4
A
41 52Right-handed alpha
Helix 5
AA5
A
60 64Right-handed 310
Helix 6
AA6
A
69 84Right-handed alpha
Helix 7
AA7
A
88 94Right-handed alpha
Helix 8
AA8
A
94 103Right-handed alpha
Helix 9
AA9
A
104 117Right-handed alpha
Helix 10
AB1
A
134 138Right-handed 310
Helix 11
AB2
A
178 181Right-handed 310
Helix 12
AB3
A
229 241Right-handed alpha
Helix 13
AB4
A
242 267Right-handed alpha
Helix 14
AB5
A
268 270Right-handed 310
Helix 15
AB6
A
271 301Right-handed alpha
Helix 16
AB7
A
305 331Right-handed alpha
Helix 17
AB8
A
332 337Right-handed 310
Helix 18
AB9
A
345 347Right-handed 310
Helix 19
AC1
A
348 361Right-handed alpha
Helix 20
AC2
A
366 380Right-handed alpha
Helix 21
AC3
B
5 24Right-handed alpha
Helix 22
AC4
B
25 34Right-handed alpha
Helix 23
AC5
B
40 50Right-handed alpha
Helix 24
AC6
B
58 62Right-handed 310
Helix 25
AC7
B
66 81Right-handed alpha
Helix 26
AC8
B
86 101Right-handed alpha
Helix 27
AC9
B
102 107Right-handed alpha
Helix 28
AD1
B
108 114Right-handed alpha
Helix 29
AD2
B
214 249Right-handed alpha
Helix 30
AD3
B
259 289Right-handed alpha
Helix 31
AD4
B
294 320Right-handed alpha
Helix 32
AD5
B
321 325Right-handed 310
Helix 33
AD6
B
329 341Right-handed alpha
Helix 34
AD7
B
346 363Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 6WY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 125first strand
Strand 2
A
166 172parallel
Strand 3
A
183 189anti-parallel
Strand 4
A
223 224anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 144first strand
Strand 2
A
148 156anti-parallel
Strand 3
A
207 219anti-parallel
Strand 4
A
195 201anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 122first strand
Strand 2
B
160 169parallel
Strand 3
B
137 141parallel
Strand 4
B
144 154anti-parallel
Strand 5
B
197 210anti-parallel
Strand 6
B
185 191anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 122first strand
Strand 2
B
160 169parallel
Strand 3
B
172 179anti-parallel
Strand 4
B
197 210anti-parallel
Strand 5
B
185 191anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 251first strand
Strand 2
B
254 255anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il