Analysis of interatomic Contacts of Structural Units in PDB entry:
6WYC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WYC entry

There are 12 chains in PDB entry 6WYC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 62
A	LEU 64	GLY 286
A	GLU 288	SER 333
B	MET 1	GLY 62
B	LEU 64	GLY 286
B	GLU 288	SER 333
C	MET 1	GLY 62
C	LEU 64	GLY 286
C	GLU 288	SER 333
D	MET 1	GLY 62
D	LEU 64	GLY 286
D	GLU 288	ASN 332

There are 51 helices in PDB entry 6WYC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	22	Right-handed alpha
Helix 2	AA2	A	36	46	Right-handed alpha
Helix 3	AA3	A	78	82	Right-handed 310
Helix 4	AA4	A	101	106	Right-handed alpha
Helix 5	AA5	A	106	111	Right-handed alpha
Helix 6	AA6	A	134	138	Right-handed 310
Helix 7	AA7	A	149	166	Right-handed alpha
Helix 8	AA8	A	193	198	Right-handed 310
Helix 9	AA9	A	210	219	Right-handed alpha
Helix 10	AB1	A	220	223	Right-handed 310
Helix 11	AB2	A	252	266	Right-handed alpha
Helix 12	AB3	A	280	285	Right-handed 310
Helix 13	AB4	A	315	332	Right-handed alpha
Helix 14	AB5	B	9	22	Right-handed alpha
Helix 15	AB6	B	36	46	Right-handed alpha
Helix 16	AB7	B	78	82	Right-handed 310
Helix 17	AB8	B	102	106	Right-handed alpha
Helix 18	AB9	B	106	111	Right-handed alpha
Helix 19	AC1	B	134	138	Right-handed 310
Helix 20	AC2	B	149	166	Right-handed alpha
Helix 21	AC3	B	193	198	Right-handed 310
Helix 22	AC4	B	210	219	Right-handed alpha
Helix 23	AC5	B	220	223	Right-handed 310
Helix 24	AC6	B	252	266	Right-handed alpha
Helix 25	AC7	B	280	285	Right-handed 310
Helix 26	AC8	B	315	332	Right-handed alpha
Helix 27	AC9	C	9	22	Right-handed alpha
Helix 28	AD1	C	36	46	Right-handed alpha
Helix 29	AD2	C	78	82	Right-handed 310
Helix 30	AD3	C	102	106	Right-handed alpha
Helix 31	AD4	C	106	111	Right-handed alpha
Helix 32	AD5	C	134	138	Right-handed 310
Helix 33	AD6	C	149	166	Right-handed alpha
Helix 34	AD7	C	193	198	Right-handed 310
Helix 35	AD8	C	210	219	Right-handed alpha
Helix 36	AD9	C	220	223	Right-handed 310
Helix 37	AE1	C	252	266	Right-handed alpha
Helix 38	AE2	C	280	285	Right-handed 310
Helix 39	AE3	C	315	332	Right-handed alpha
Helix 40	AE4	D	9	21	Right-handed alpha
Helix 41	AE5	D	36	46	Right-handed alpha
Helix 42	AE6	D	78	82	Right-handed 310
Helix 43	AE7	D	101	111	Right-handed alpha
Helix 44	AE8	D	134	138	Right-handed 310
Helix 45	AE9	D	149	166	Right-handed alpha
Helix 46	AF1	D	193	198	Right-handed 310
Helix 47	AF2	D	210	219	Right-handed alpha
Helix 48	AF3	D	220	223	Right-handed 310
Helix 49	AF4	D	252	266	Right-handed alpha
Helix 50	AF5	D	280	285	Right-handed 310
Helix 51	AF6	D	315	330	Right-handed alpha

There are 12 sheets in PDB entry 6WYC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	63	66	anti-parallel
Strand 3	A	69	74	anti-parallel
Strand 4	A	27	32	parallel
Strand 5	A	2	6	parallel
Strand 6	A	91	94	parallel
Strand 7	A	115	118	parallel
Strand 8	A	144	146	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	207	first strand
Strand 2	A	226	233	anti-parallel
Strand 3	A	168	178	parallel
Strand 4	A	239	247	anti-parallel
Strand 5	A	305	312	anti-parallel
Strand 6	A	291	294	anti-parallel
Strand 7	A	272	275	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	207	first strand
Strand 2	A	226	233	anti-parallel
Strand 3	A	168	178	parallel
Strand 4	A	239	247	anti-parallel
Strand 5	A	305	312	anti-parallel
Strand 6	A	299	300	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	63	66	anti-parallel
Strand 3	B	69	74	anti-parallel
Strand 4	B	27	32	parallel
Strand 5	B	2	6	parallel
Strand 6	B	91	94	parallel
Strand 7	B	115	118	parallel
Strand 8	B	144	146	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	208	first strand
Strand 2	B	226	233	anti-parallel
Strand 3	B	168	178	parallel
Strand 4	B	239	247	anti-parallel
Strand 5	B	305	312	anti-parallel
Strand 6	B	291	294	anti-parallel
Strand 7	B	272	275	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	208	first strand
Strand 2	B	226	233	anti-parallel
Strand 3	B	168	178	parallel
Strand 4	B	239	247	anti-parallel
Strand 5	B	305	312	anti-parallel
Strand 6	B	299	300	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	63	66	anti-parallel
Strand 3	C	69	74	anti-parallel
Strand 4	C	27	32	parallel
Strand 5	C	2	6	parallel
Strand 6	C	91	94	parallel
Strand 7	C	115	118	parallel
Strand 8	C	144	146	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	207	first strand
Strand 2	C	226	233	anti-parallel
Strand 3	C	168	178	parallel
Strand 4	C	239	247	anti-parallel
Strand 5	C	305	312	anti-parallel
Strand 6	C	291	294	anti-parallel
Strand 7	C	272	275	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	207	first strand
Strand 2	C	226	233	anti-parallel
Strand 3	C	168	178	parallel
Strand 4	C	239	247	anti-parallel
Strand 5	C	305	312	anti-parallel
Strand 6	C	299	300	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	63	66	anti-parallel
Strand 3	D	69	74	anti-parallel
Strand 4	D	27	32	parallel
Strand 5	D	2	6	parallel
Strand 6	D	91	94	parallel
Strand 7	D	115	118	parallel
Strand 8	D	144	146	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	207	first strand
Strand 2	D	226	233	anti-parallel
Strand 3	D	168	178	parallel
Strand 4	D	239	247	anti-parallel
Strand 5	D	305	312	anti-parallel
Strand 6	D	291	294	anti-parallel
Strand 7	D	272	275	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	207	first strand
Strand 2	D	226	233	anti-parallel
Strand 3	D	168	178	parallel
Strand 4	D	239	247	anti-parallel
Strand 5	D	305	312	anti-parallel
Strand 6	D	299	300	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WYC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WYC